Motif IL_01551.1 Version IL_01551.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 4-9 | 4-10 | 5-8 | 5-9 | 6-7 | 6-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VX2_074 | 1VX2 | 0.7332 | 2 | 2 | 18S ribosomal RNA | U | 1821 | A | 1822 | A | 1823 | G | 1826 | U | 1827 | C | 1828 | * | G | 1706 | U | 1707 | C | 1708 | G | 1709 | C | 1710 | U | 1711 | A | 1712 | cWW | ncWW | cWW | ||||
| 2 | IL_1VX6_131 | 1VX6 | 0.5141 | 0 | A | 28S ribosomal RNA | C | 3628 | U | 3629 | U | 3630 | U | 3631 | U | 3632 | U | 3633 | * | A | 3652 | G | 3653 | C | 3654 | U | 3655 | A | 3656 | G | 3657 | G | 3658 | cWW | ncWW | ncWW | cWW | |||
| 3 | IL_1VWW_040 | 1VWW | 0.0000 | -6 | 5 | 28S ribosomal RNA | C | 907 | G | 908 | A | 909 | G | 910 | U | 911 | G | 912 | * | U | 750 | G | 751 | G | 752 | C | 753 | U | 754 | C | 755 | G | 756 | ncWW | ncWB | ncWW | ||||
| 4 | IL_1VW3_094 | 1VW3 | 0.5533 | 0 | A | 21S ribosomal RNA | U | 3229 | U | 3230 | A | 3231 | U | 3232 | A | 3233 | A | 3242 | * | U | 3162 | U | 3163 | A | 3164 | U | 3165 | A | 3166 | U | 3167 | A | 3168 | cWW | ncWw | ncwW | ncWW | cWW | ||
| 5 | IL_1VWW_027 | 1VWW | 0.6062 | 14 | 5 | 28S ribosomal RNA | G | 488 | C | 489 | C | 490 | G | 491 | U | 492 | G | 493 | * | C | 661 | C | 662 | G | 663 | G | 664 | C | 665 | A | 667 | C | 668 | |||||||
| 6 | IL_1VW3_051 | 1VW3 | 0.8515 | 1 | A | 21S ribosomal RNA | C | 1638 | A | 1639 | U | 1640 | A | 1641 | A | 1642 | G | 1643 | * | C | 1649 | A | 1650 | A | 1651 | A | 1653 | A | 1654 | A | 1655 | G | 1656 | cWW | tHW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAAAGUC*GUCGCUA | 1 |
| CUUUUU*AGCUAGG | 1 |
| GGUC*GUC | 1 |
| UUAUAA*UUAUAUA | 1 |
| GAAGGUGGCUCGG*CCGAGUGUUACAGC | 1 |
| CAUAAG*CAAUAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAAGU*UCGCU | 1 |
| UUUU*GCUAG | 1 |
| GU*U | 1 |
| UAUA*UAUAU | 1 |
| AAGGUGGCUCG*CGAGUGUUACAG | 1 |
| AUAA*AAUAAA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_01551.1 | Only in the parent motif |
|---|---|---|---|
| IL_89252.2 Compare | IL_1VW3_094, IL_1VW3_051 | IL_1VX6_131, IL_1VWW_027, IL_1VX2_074, IL_1VWW_040 | IL_4CUV_079, IL_3U5H_080 |
Children motifs
| Child motif | Common motif instances | Only in IL_01551.1 | Only in the child motif |
|---|---|---|---|
| IL_22165.1 Compare | IL_1VW3_094, IL_1VX6_131 | IL_1VW3_051, IL_1VWW_027, IL_1VX2_074, IL_1VWW_040 | |
| IL_06584.1 Compare | IL_1VW3_051 | IL_1VW3_094, IL_1VX6_131, IL_1VWW_027, IL_1VX2_074, IL_1VWW_040 | IL_4CUV_079, IL_4R0D_015, IL_3U5H_080 |
- Annotations
-
- (6)
- Basepair signature
- cWW-L-R-R-R-R-R-L-L-L-cWW
- Heat map statistics
- Min 0.51 | Avg 0.62 | Max 0.96
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