IL_1VWW_044

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUAGAGGUCUUGG*UCAACCUAUUCU

Length

26 nucleotides

Bulged bases

1VWW|1|5|U|1754, 1VWW|1|5|C|1755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38078.1

Basepair signature

cWW-cWW-L-R-L-cWW-cWW

Number of instances in this motif group

9

Unit IDs

1VWW|1|5|A|1746
1VWW|1|5|U|1747
1VWW|1|5|U|1748
1VWW|1|5|A|1749
1VWW|1|5|G|1750
1VWW|1|5|A|1751
1VWW|1|5|G|1752
1VWW|1|5|G|1753
1VWW|1|5|U|1754
1VWW|1|5|C|1755
1VWW|1|5|U|1756
1VWW|1|5|U|1757
1VWW|1|5|G|1758
1VWW|1|5|G|1759
*
1VWW|1|5|U|1773
1VWW|1|5|C|1774
1VWW|1|5|A|1775
1VWW|1|5|A|1776
1VWW|1|5|C|1777
1VWW|1|5|C|1778
1VWW|1|5|U|1779
1VWW|1|5|A|1780
1VWW|1|5|U|1781
1VWW|1|5|U|1782
1VWW|1|5|C|1783
1VWW|1|5|U|1784

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA