Motif IL_38078.1 Version IL_38078.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-10 | 4-7 | 4-9 | 5-6 | 5-7 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VX2_010 | 1VX2 | 0.2986 | 0 | 2 | SSU rRNA | U | 116 | C | 117 | C | 118 | U | 119 | U | 120 | U | 121 | * | A | 343 | U | 344 | U | 345 | C | 346 | G | 347 | cWW | ncWw | |||||||
| 2 | IL_3U5F_010 | 3U5F | 0.0000 | 0 | 6 | SSU rRNA | U | 117 | U | 118 | A | 119 | U | 120 | U | 121 | U | 122 | * | A | 295 | U | 296 | U | 297 | C | 298 | A | 299 | cWW | ntHS | cWw | cWw | cWW | ||||
| 3 | IL_4CUX_010 | 4CUX | 0.2075 | 0 | 2 | SSU rRNA | U | 117 | U | 118 | A | 119 | U | 120 | U | 121 | U | 122 | * | A | 295 | U | 296 | U | 297 | C | 298 | A | 299 | cWW | ncBW | ncWw | cWW | |||||
| 4 | IL_4BPP_010 | 4BPP | 0.2895 | 0 | A | SSU rRNA | U | 113 | U | 114 | A | 115 | U | 116 | U | 117 | U | 118 | * | A | 286 | U | 287 | C | 288 | U | 289 | A | 290 | cWW | cwW | ntHS | cWw | cWW | ||||
| 5 | IL_1VWW_042 | 1VWW | 0.7420 | 1 | 5 | LSU rRNA | G | 1074 | G | 1075 | C | 1076 | C | 1077 | A | 1078 | C | 1079 | * | G | 1221 | G | 1233 | G | 1234 | G | 1235 | C | 1236 | ncWW | ncWw | ncSH | ncWW | |||||
| 6 | IL_1VWW_028 | 1VWW | 0.6595 | -5 | 5 | LSU rRNA | C | 656 | C | 657 | C | 658 | G | 659 | A | 660 | C | 661 | * | G | 493 | U | 494 | C | 495 | G | 496 | G | 497 | cWW | ncWW | ncWW | ||||||
| 7 | IL_1VWW_044 | 1VWW | 0.7131 | 15 | 5 | LSU rRNA | G | 1211 | G | 1212 | G | 1213 | C | 1215 | C | 1216 | G | 1217 | * | C | 1082 | U | 1083 | C | 1084 | C | 1085 | C | 1086 | cWW | ncWW | cWW | ||||||
| 8 | IL_1VWW_072 | 1VWW | 0.8897 | -5 | 5 | LSU rRNA | G | 1753 | C | 1755 | U | 1756 | U | 1757 | G | 1758 | G | 1759 | * | U | 1773 | C | 1774 | A | 1775 | A | 1776 | C | 1777 | ncWW | cWW | |||||||
| 9 | IL_4A1B_014 | 4A1B | 0.9358 | 1 | 1 | LSU rRNA | G | 430 | A | 431 | G | 432 | A | 434 | A | 435 | U | 436 | * | A | 646 | U | 647 | G | 648 | G | 649 | C | 650 | cWW | ncWW | ntSH | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAUUU*AUUCA | 2 |
| UCCUUU*AUUCG | 1 |
| UUAUUU*AUCUA | 1 |
| CGGUAA*UAAAUG | 1 |
| UCCC*GG | 1 |
| AUUAGAGGUCUUGG*UCAACCUAUUCU | 1 |
| GGAA*UC | 1 |
| GAGCAAU*AUGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAUU*UUC | 2 |
| CCUU*UUC | 1 |
| UAUU*UCU | 1 |
| GGUA*AAAU | 1 |
| CC* | 1 |
| UUAGAGGUCUUG*CAACCUAUUC | 1 |
| GA* | 1 |
| AGCAA*UGG | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_38078.1 | Only in the parent motif |
|---|---|---|---|
| IL_30840.3 Compare | IL_3U5F_010, IL_4A1B_014, IL_4BPP_010, IL_4CUX_010 | IL_1VWW_072, IL_1VWW_044, IL_1VX2_010, IL_1VWW_028, IL_1VWW_042 |
Children motifs
| Child motif | Common motif instances | Only in IL_38078.1 | Only in the child motif |
|---|---|---|---|
| IL_41366.1 Compare | IL_3U5F_010, IL_4A1B_014, IL_4BPP_010, IL_4CUX_010 | IL_1VWW_072, IL_1VWW_044, IL_1VX2_010, IL_1VWW_042, IL_1VWW_028 | IL_4W23_010, IL_4W21_039 |
- Annotations
-
- (9)
- Basepair signature
- cWW-cWW-L-R-L-cWW-cWW
- Heat map statistics
- Min 0.21 | Avg 0.61 | Max 0.99
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