IL_1VWW_048

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUCAUCAG*CUGGAG

Length

14 nucleotides

Bulged bases

1VWW|1|5|U|1930, 1VWW|1|5|C|1931, 1VWW|1|5|G|2055, 1VWW|1|5|A|2057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86933.1

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

11

Unit IDs

1VWW|1|5|C|1926
1VWW|1|5|U|1927
1VWW|1|5|C|1928
1VWW|1|5|A|1929
1VWW|1|5|U|1930
1VWW|1|5|C|1931
1VWW|1|5|A|1932
1VWW|1|5|G|1933
*
1VWW|1|5|C|2053
1VWW|1|5|U|2054
1VWW|1|5|G|2055
1VWW|1|5|G|2056
1VWW|1|5|A|2057
1VWW|1|5|G|2058

Current chains

Chain 5

28S ribosomal RNA

Nearby chains