Motif IL_86933.1 Version IL_86933.1 of this group appears in releases 1.17 to 1.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12		13		14	1-14	2-13	3-12	4-10	4-11	5-10	6-8	6-9	6-10	7-8	12-13
1	IL_1VWW_048	1VWW	0.9549	0		5	28S ribosomal RNA	C	1172	G	1173	G	1174	A	1175	C	1176	U	1177	G	1178	*	C	1183	A	1184	G	1185	U	1186	G	1187	C	1188	G	1189				ncWW						ncWW
2	IL_1VX2_049	1VX2	0.9338	0		2	18S ribosomal RNA	G	1129	G	1130	G	1131	C	1132	A	1133	G	1134	C	1135	*	G	1097	C	1098	G	1099	A	1100	U	1101	G	1102	C	1103	cWW						ncwW			ncWW	ncWH
3	IL_4CUX_013	4CUX	0.6465	0		2	18S RRNA	G	195	G	196	A	197	A	198	G	199	A	200	G	201	*	C	184	U	185	C	186	G	187	A	188	C	189	C	190	ncWW					ncWW		ncWW		cWW
4	IL_2QBG_006	2QBG	0.0826	0		B	23S rRNA	C	510	U	511	G	512	A	513	A	514	A	515	C	516	*	G	24	U	25	G	26	G	27	A	28	U	29	G	30	cWW	cwW	tSH		tHS	tHS		ntHS	ncWS	cWW
5	IL_4QCN_001	4QCN	0.0000	0		A	23S Ribosomal RNA	C	535	U	536	G	537	A	538	A	539	A	540	C	541	*	G	24	U	25	G	26	G	27	A	28	U	29	G	30	cWW	cwW	tSH		tHS	tHS			ncWS	cWW
6	IL_4IOA_001	4IOA	0.0728	0	Triple sheared with non-canonical cWW (H)	X	LSU rRNA	C	520	U	521	G	522	A	523	A	524	A	525	C	526	*	G	24	U	25	G	26	G	27	A	28	U	29	G	30	cWW	cwW	tSH		tHS	tHS		ntHS		cWW
7	IL_1VX6_018	1VX6	0.0897	0		A+C	28S ribosomal RNA + 5.8S ribosomal RNA	C	414	U	415	G	416	A	417	A	418	A	419	U	420	*	A	17	U	18	G	19	G	20	A	21	U	22	G	23	cWW	cwW	tSH		tHS	tHS		ntHS		cWW
8	IL_1S72_001	1S72	0.1447	0	Triple sheared with non-canonical cWW (H)	0	LSU rRNA	A	516	U	517	G	518	A	519	A	520	A	521	U	522	*	G	21	U	22	G	23	G	24	A	25	U	26	U	27	cWW	cwW	tSH		tHS	tHS				cWW
9	IL_3U5H_016	3U5H	0.1291	0		5+8	25S rRNA + 5.8S rRNA	G	404	U	405	G	406	A	407	A	408	A	409	U	410	*	A	13	C	14	G	15	G	16	A	17	U	18	C	19	cWW	cwW	ntSH		tHS	tHS		ntHS	ncWS	cWW
10	IL_4CUV_019	4CUV	0.1706	0		1+4	25S RRNA + 5.8S RRNA	G	404	U	405	G	406	A	407	A	408	A	409	U	410	*	A	13	C	14	G	15	G	16	A	17	U	18	C	19	cWW	cwW	ntSH		ntHS	tHS		ntHS		cWW
11	IL_1VWW_019	1VWW	0.2264	-6		5+8	28S ribosomal RNA + 5.8S ribosomal RNA	G	415	U	416	G	417	A	418	A	419	A	420	C	421	*	G	13	U	14	G	15	G	16	A	17	U	18	C	19	ncWW	ncwW	ntSH		tHS	ntHS		ntHS		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUGAAAC*GUGGAUG	3
GUGAAAU*ACGGAUC	2
CUCAUCAG*CUGGAG	1
GCGAUGC*GGGCAGC	1
CUCGACC*GGAAGAG	1
CUGAAAU*AUGGAUG	1
AUGAAAU*GUGGAUU	1
GCCCGG*UC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGAAA*UGGAU	5
UGAAA*CGGAU	2
UCAUCA*UGGA	1
CGAUG*GGCAG	1
UCGAC*GAAGA	1
CCCG*	1

Release history

Release	1.17
Date	2014-09-04
Status	New id, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_86933.1	Only in the parent motif
IL_44067.6 Compare	IL_1S72_001, IL_4CUX_013, IL_4CUV_019, IL_2QBG_006, IL_3U5H_016, IL_4IOA_001	IL_1VX6_018, IL_1VWW_019, IL_1VX2_049, IL_4QCN_001, IL_1VWW_048	IL_4NVV_001

Children motifs

Child motif	Common motif instances	Only in IL_86933.1	Only in the child motif
IL_86933.2 Compare	IL_1VX6_018, IL_1S72_001, IL_4QCN_001, IL_4CUX_013, IL_4CUV_019, IL_2QBG_006, IL_3U5H_016, IL_4IOA_001	IL_1VWW_019, IL_1VX2_049, IL_1VWW_048	IL_4W21_019

Annotations: (9)
Triple sheared with non-canonical cWW (H) (2)
Basepair signature: cWW-cWW-tSH-tHS-tHS-L-R-cWW
Heat map statistics: Min 0.07 | Avg 0.45 | Max 1.00

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Coloring options: Nucleotide numbers

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