IL_1VWW_049
3D structure
- PDB id
- 1VWW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 1VWW|1|5|C|1935, 1VWW|1|5|G|1940, 1VWW|1|5|A|2041, 1VWW|1|5|U|2044, 1VWW|1|5|G|2045
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VWW_049 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.2475
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
1VWW|1|5|G|1933
1VWW|1|5|A|1934
1VWW|1|5|C|1935
1VWW|1|5|C|1936
1VWW|1|5|C|1937
1VWW|1|5|C|1938
1VWW|1|5|A|1939
1VWW|1|5|G|1940
1VWW|1|5|A|1941
1VWW|1|5|A|1942
1VWW|1|5|A|1943
1VWW|1|5|A|1944
*
1VWW|1|5|U|2038
1VWW|1|5|G|2039
1VWW|1|5|A|2040
1VWW|1|5|A|2041
1VWW|1|5|A|2042
1VWW|1|5|A|2043
1VWW|1|5|U|2044
1VWW|1|5|G|2045
1VWW|1|5|G|2046
1VWW|1|5|A|2047
1VWW|1|5|U|2048
1VWW|1|5|G|2049
1VWW|1|5|G|2050
1VWW|1|5|C|2051
1VWW|1|5|G|2052
1VWW|1|5|C|2053
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA
Coloring options: