IL_1VWW_064

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUCCCG*CGGGGGAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55938.7

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

27

Unit IDs

1VWW|1|5|C|2589
1VWW|1|5|G|2590
1VWW|1|5|A|2591
1VWW|1|5|U|2592
1VWW|1|5|C|2593
1VWW|1|5|C|2594
1VWW|1|5|C|2595
1VWW|1|5|G|2596
*
1VWW|1|5|C|2749
1VWW|1|5|G|2750
1VWW|1|5|G|2751
1VWW|1|5|G|2752
1VWW|1|5|G|2753
1VWW|1|5|G|2754
1VWW|1|5|A|2755
1VWW|1|5|G|2756

Current chains

Chain 5

28S ribosomal RNA

Nearby chains