IL_55938.7

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6		7	1-5	1-7	2-5	2-6	3-4	5-6	5-7
1	IL_4CUX_014	4CUX	0.3861	1		2	18S RRNA	G	204	U	205	A	206	*	U	259	U	261	U	262	C	263		cWW		cwW	ncWW
2	IL_4CUV_063	4CUV	0.3537	1		1	25S RRNA	C	1275	U	1276	C	1277	*	G	1262	G	1264	U	1265	G	1266		ncWW		ncwW	cWW	cSH
3	IL_3U5H_061	3U5H	0.2807	1		5	25S rRNA	C	1275	U	1276	C	1277	*	G	1262	G	1264	U	1265	G	1266		cWW		cwW	cWW	cSH
4	IL_1VWW_088	1VWW	0.3255	-2		5	28S ribosomal RNA	C	2014	U	2015	C	2016	*	G	2001	G	2003	U	2004	G	2005		cWW		cwW	cWW		ncSH
5	IL_1VWW_064	1VWW	0.2820	9		5	28S ribosomal RNA	G	1605	U	1606	C	1607	*	G	1586	G	1587	U	1588	C	1589		cWW		ncwW	cWW	ncSH
6	IL_4BPP_014	4BPP	0.2393	1		A	18S RRNA	G	199	U	200	A	201	*	U	256	G	257	U	259	C	260		cWW		cwW	cWW	ncSH
7	IL_1VW3_020	1VW3	0.1784	0		A	21S ribosomal RNA	A	647	U	648	C	649	*	G	629	G	630	U	631	U	632		cWW		cwW	cWW	cSH
8	IL_3U5H_033	3U5H	0.1551	0		5	25S rRNA	A	888	U	889	C	890	*	G	869	G	870	U	871	U	872		cWW		cwW	cWW	cSH
9	IL_4CUV_036	4CUV	0.1414	0		1	25S RRNA	A	888	U	889	C	890	*	G	869	G	870	U	871	U	872		cWW	ntHS	cwW	cWW	cSH
10	IL_4A1B_038	4A1B	0.1358	0		1	26S RRNA	U	913	U	914	C	915	*	G	894	A	895	U	896	A	897		cWW		cwW	cWW	cSH
11	IL_1VX6_039	1VX6	0.0000	0		A	28S ribosomal RNA	U	1007	U	1008	C	1009	*	G	988	A	989	U	990	A	991		cWW	tHS	cwW	cWW	ncSH
12	IL_4IOA_018	4IOA	0.1538	0		X	LSU rRNA	C	769	U	770	C	771	*	G	751	G	752	U	753	G	754		cWW	ntHS	cwW	cWW	cSH
13	IL_4QCN_022	4QCN	0.1368	0		A	23S Ribosomal RNA	C	803	U	804	C	805	*	G	785	G	786	U	787	G	788		cWW		cwW	cWW	cSH
14	IL_1S72_029	1S72	0.1714	0	Major groove platform with extra cWW (H)	0	LSU rRNA	C	849	U	850	C	851	*	G	830	U	831	U	832	G	833		cWW		cwW	cWW	cSH
15	IL_3U5F_014	3U5F	0.2399	1		6	18S rRNA	G	204	U	205	A	206	*	U	259	U	261	U	262	C	263		cWW		cwW	cWW	cSH
16	IL_1S72_082	1S72	0.2341	1		0	LSU rRNA	G	2494	U	2495	C	2496	*	G	2524	G	2525	U	2527	U	2528		cWW		cwW	cWW	cSH
17	IL_4QCN_091	4QCN	0.2629	1		A	23S Ribosomal RNA	A	2471	U	2472	C	2473	*	G	2501	G	2502	U	2504	U	2505		cWW		cwW	cWW	ncSH
18	IL_3U5H_111	3U5H	0.3902	1		5	25S rRNA	G	2828	U	2829	G	2830	*	U	2858	U	2859	U	2861	U	2862		cWW		cwW	cWW
19	IL_1VX6_112	1VX6	0.3404	1		A	28S ribosomal RNA	G	3187	U	3188	G	3189	*	U	3217	U	3218	U	3220	U	3221		cWW		cwW	cWW
20	IL_4A1B_109	4A1B	0.3754	1		1	26S RRNA	G	2816	U	2817	G	2818	*	U	2846	U	2847	U	2849	U	2850		cWW		cwW	cWW
21	IL_4CUV_115	4CUV	0.3944	1		1	25S RRNA	G	2828	U	2829	G	2830	*	U	2858	U	2859	U	2861	U	2862		cWW		cwW	ncWW
22	IL_1S72_003	1S72	0.4045	0	Major groove platform with extra cWW (H)	0	LSU rRNA	G	39	C	40	G	41	*	C	440	A	441	A	442	C	443		cWW	cWWa	ncWW	cWW	cSH
23	IL_2QBZ_004	2QBZ	0.4461	0		X	M-Box RNA, ykoK riboswitch aptamer	G	149	U	150	G	151	*	C	33	U	34	C	35	C	36		cWW	cWw		cWW	cSH
24	IL_3P49_006	3P49	0.6763	1		A	Glycine riboswitch	C	51	A	52	G	53	*	C	34	G	35	A	37	G	38		ncWW		ntSH	ncWW
25	IL_3P49_009	3P49	0.6933	1		A	Glycine riboswitch	C	142	A	143	G	144	*	C	109	G	110	A	112	G	113		cWW		ntSH	ncWW
26	IL_1XJR_001	1XJR	0.7080	1	Isolated basepair with bulged bases	A	s2m RNA	C	39	A	40	G	41	*	C	9	C	10	A	12	G	13		cWW			cWW
27	IL_1VWW_120	1VWW	0.7080	1		5	28S ribosomal RNA	A	3748	C	3749	G	3750	*	C	3700	C	3701	G	3703	U	3704	ntHW	cWW			ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUG*UUUUU	4
AUC*GGUU	3
GUA*UUUUC	2
UUC*GAUA	2
CUC*GGUG	2
CAG*CGAAG	2
GAGUG*CUC	1
CUC*GAGUG	1
GAU*AC	1
CGAUCCCG*CGGGGGAG	1
GUA*UGAUC	1
CUC*GUUG	1
GUC*GGCUU	1
AUC*GGUUU	1
GCG*CAAC	1
GUG*CUCC	1
CAG*CCGAG	1
ACG*CCAGU	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*UUU	6
U*GU	5
U*AU	2
A*GAA	2
AGU*U	1
U*AGU	1
A*	1
GAUCCC*GGGGGA	1
U*GAU	1
U*UU	1
U*GCU	1
U*GUU	1
C*AA	1
U*UC	1
A*CGA	1
C*CAG	1

Release history

Release	1.17
Date	2014-09-04
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_55938.7	Only in the parent motif
IL_55938.6 Compare	IL_4A1B_038, IL_4CUV_036, IL_4CUV_063, IL_1S72_029, IL_3U5F_014, IL_2QBZ_004, IL_1S72_003, IL_4BPP_014, IL_4CUX_014, IL_1XJR_001, IL_3U5H_061, IL_3U5H_111, IL_1VW3_020, IL_4A1B_109, IL_3U5H_033, IL_3P49_006, IL_3P49_009, IL_4IOA_018, IL_1S72_082, IL_4CUV_115	IL_1VX6_112, IL_1VWW_088, IL_4QCN_091, IL_1VWW_064, IL_4QCN_022, IL_1VX6_039, IL_1VWW_120	IL_4NVV_024

Children motifs

Child motif	Common motif instances	Only in IL_55938.7	Only in the child motif
IL_55938.8 Compare	IL_4A1B_038, IL_1VX6_112, IL_4CUV_063, IL_4QCN_091, IL_1VW3_020, IL_4IOA_018, IL_3U5H_061, IL_1S72_003, IL_4QCN_022, IL_3P49_006, IL_3P49_009, IL_1S72_082, IL_4CUV_036, IL_1XJR_001, IL_4BPP_014, IL_3U5H_111, IL_4A1B_109, IL_3U5H_033, IL_1S72_029, IL_3U5F_014, IL_2QBZ_004, IL_4CUX_014, IL_1VX6_039, IL_4CUV_115	IL_1VWW_120, IL_1VWW_088, IL_1VWW_064	IL_4W21_085, IL_4W21_059, IL_4W21_139

Motif IL_55938.7 Version IL_55938.7 of this group appears in releases 1.17 to 1.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_55938.7 Version IL_55938.7 of this group appears in releases 1.17 to 1.17

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