IL_1VWW_068

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGCGCCCUGGAAUGGG*CCCGAGAGAGGGGCCC

Length

33 nucleotides

Bulged bases

1VWW|1|5|G|2652, 1VWW|1|5|U|2661, 1VWW|1|5|A|2674

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80494.4

Basepair signature

cWW-tWH-L-R-tHS-bif-cWW

Number of instances in this motif group

3

Unit IDs

1VWW|1|5|G|2648
1VWW|1|5|G|2649
1VWW|1|5|G|2650
1VWW|1|5|C|2651
1VWW|1|5|G|2652
1VWW|1|5|C|2653
1VWW|1|5|C|2654
1VWW|1|5|C|2655
1VWW|1|5|U|2656
1VWW|1|5|G|2657
1VWW|1|5|G|2658
1VWW|1|5|A|2659
1VWW|1|5|A|2660
1VWW|1|5|U|2661
1VWW|1|5|G|2662
1VWW|1|5|G|2663
1VWW|1|5|G|2664
*
1VWW|1|5|C|2670
1VWW|1|5|C|2671
1VWW|1|5|C|2672
1VWW|1|5|G|2673
1VWW|1|5|A|2674
1VWW|1|5|G|2675
1VWW|1|5|A|2676
1VWW|1|5|G|2677
1VWW|1|5|A|2678
1VWW|1|5|G|2679
1VWW|1|5|G|2680
1VWW|1|5|G|2681
1VWW|1|5|G|2682
1VWW|1|5|C|2683
1VWW|1|5|C|2684
1VWW|1|5|C|2685

Current chains

Chain 5

28S ribosomal RNA

Nearby chains