IL_1VWW_070

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAACAAUGUAGGUA*UACCUACUAUC

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37914.2

Basepair signature

cWW-cWW-tHW-cSW-tSW-cWW

Number of instances in this motif group

3

Unit IDs

1VWW|1|5|G|2831
1VWW|1|5|A|2832
1VWW|1|5|A|2833
1VWW|1|5|C|2834
1VWW|1|5|A|2835
1VWW|1|5|A|2836
1VWW|1|5|U|2837
1VWW|1|5|G|2838
1VWW|1|5|U|2839
1VWW|1|5|A|2840
1VWW|1|5|G|2841
1VWW|1|5|G|2842
1VWW|1|5|U|2843
1VWW|1|5|A|2844
*
1VWW|1|5|U|3844
1VWW|1|5|A|3845
1VWW|1|5|C|3846
1VWW|1|5|C|3847
1VWW|1|5|U|3848
1VWW|1|5|A|3849
1VWW|1|5|C|3850
1VWW|1|5|U|3851
1VWW|1|5|A|3852
1VWW|1|5|U|3853
1VWW|1|5|C|3854

Current chains

Chain 5

28S ribosomal RNA

Nearby chains