Motif IL_37914.2 Version IL_37914.2 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-5 | 2-8 | 3-4 | 3-7 | 4-6 | 5-7 | 5-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUX_056 | 4CUX | 0.3330 | 2 | 2 | 18S RRNA | C | 1156 | A | 1157 | A | 1160 | * | U | 1617 | C | 1618 | C | 1619 | C | 1620 | U | 1621 | G | 1622 | cWW | ncWW | ncWW | ncSW | ncSH | |||
| 2 | IL_1S72_036 | 1S72 | 0.0000 | 3 | 0 | LSU rRNA | C | 1004 | A | 1005 | C | 1008 | * | G | 958 | C | 959 | A | 961 | C | 962 | C | 963 | G | 964 | cWW | tHW | cWW | cWW | cSW | tSW | cSH | ntSW |
| 3 | IL_1VWW_070 | 1VWW | 0.2555 | 16 | 5 | 28S ribosomal RNA | C | 1785 | A | 1786 | C | 1789 | * | G | 1739 | C | 1740 | A | 1742 | A | 1743 | U | 1744 | G | 1745 | cWW | tHW | ncWW | ntSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACCA*UCCCUG | 1 |
| CAAAC*GCGACCG | 1 |
| GAACAAUGUAGGUA*UACCUACUAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACC*CCCU | 1 |
| AAA*CGACC | 1 |
| AACAAUGUAGGU*ACCUACUAU | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_37914.2 | Only in the parent motif |
|---|---|---|---|
| IL_37914.1 Compare | IL_1S72_036, IL_4CUX_056 | IL_1VWW_070 |
Children motifs
| Child motif | Common motif instances | Only in IL_37914.2 | Only in the child motif |
|---|---|---|---|
| IL_37914.3 Compare | IL_1S72_036, IL_4CUX_056 | IL_1VWW_070 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-tHW-cSW-tSW-cWW
- Heat map statistics
- Min 0.26 | Avg 0.23 | Max 0.44
Coloring options: