IL_1VWW_082

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGGGGAA*UACCCUAC

Length

16 nucleotides

Bulged bases

1VWW|1|5|A|3901, 1VWW|1|5|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_40053.1

Basepair signature

cWW-tWW-L-tWW-tWH-cWW

Number of instances in this motif group

6

Unit IDs

1VWW|1|5|G|3895
1VWW|1|5|C|3896
1VWW|1|5|G|3897
1VWW|1|5|G|3898
1VWW|1|5|G|3899
1VWW|1|5|G|3900
1VWW|1|5|A|3901
1VWW|1|5|A|3902
*
1VWW|1|5|U|4558
1VWW|1|5|A|4559
1VWW|1|5|C|4560
1VWW|1|5|C|4561
1VWW|1|5|C|4562
1VWW|1|5|U|4563
1VWW|1|5|A|4564
1VWW|1|5|C|4565

Current chains

Chain 5

28S ribosomal RNA

Nearby chains