Motif IL_40053.1 Version IL_40053.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-4 | 2-9 | 4-8 | 5-9 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VX2_018 | 1VX2 | 0.8484 | 2 | 2 | 18S ribosomal RNA | C | 365 | U | 366 | U | 367 | G | 370 | A | 371 | U | 372 | * | A | 392 | U | 393 | G | 394 | G | 395 | cWW | ncWW | cWW | |||
| 2 | IL_4A1B_057 | 4A1B | 0.4241 | 4 | 1 | 26S RRNA | C | 1214 | U | 1215 | C | 1216 | A | 1217 | A | 1220 | G | 1221 | * | C | 1341 | U | 1342 | A | 1344 | G | 1346 | cWW | cWW | ||||
| 3 | IL_4CUV_057 | 4CUV | 0.1147 | 4 | 1 | 25S RRNA | C | 1187 | U | 1188 | C | 1189 | A | 1190 | A | 1193 | G | 1194 | * | C | 1314 | U | 1315 | A | 1317 | G | 1319 | cWW | tWW | ntWW | ntWH | cWW | |
| 4 | IL_1VX6_059 | 1VX6 | 0.0000 | 4 | A | 28S ribosomal RNA | C | 1315 | U | 1316 | C | 1317 | A | 1318 | A | 1321 | G | 1322 | * | C | 1442 | U | 1443 | A | 1445 | G | 1447 | cWW | tWW | tWW | ntWH | cWW | |
| 5 | IL_3U5H_056 | 3U5H | 0.1246 | 4 | 5 | 25S rRNA | C | 1187 | U | 1188 | C | 1189 | A | 1190 | A | 1193 | G | 1194 | * | C | 1314 | U | 1315 | A | 1317 | G | 1319 | cWW | tWW | tWW | ncWB | cWW | |
| 6 | IL_1VWW_082 | 1VWW | 0.2249 | 6 | 5 | 28S ribosomal RNA | C | 1926 | U | 1927 | C | 1928 | A | 1929 | A | 1932 | G | 1933 | * | C | 2053 | U | 2054 | G | 2056 | G | 2058 | cWW | ncSH | ntWW | ntWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCAUCAG*CUCAAG | 2 |
| CUUUCGAU*AUGG | 1 |
| CUCAUCAG*CUGAAG | 1 |
| CUCAUGAG*CUAAAG | 1 |
| GCGGGGAA*UACCCUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAUCA*UCAA | 2 |
| UUUCGA*UG | 1 |
| UCAUCA*UGAA | 1 |
| UCAUGA*UAAA | 1 |
| CGGGGA*ACCCUA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_40053.1 | Only in the parent motif |
|---|---|---|---|
| IL_12204.2 Compare | IL_4CUV_057, IL_4A1B_057, IL_3U5H_056 | IL_1VWW_082, IL_1VX2_018, IL_1VX6_059 |
Children motifs
| Child motif | Common motif instances | Only in IL_40053.1 | Only in the child motif |
|---|---|---|---|
| IL_40053.2 Compare | IL_4CUV_057, IL_4A1B_057, IL_1VX6_059, IL_3U5H_056 | IL_1VWW_082, IL_1VX2_018 |
- Annotations
-
- (6)
- Basepair signature
- cWW-tWW-L-tWW-tWH-cWW
- Heat map statistics
- Min 0.11 | Avg 0.39 | Max 0.85
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