IL_1VWW_095

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93424.7

Basepair signature

cWW-tSH-R-tHW-cWW

Number of instances in this motif group

31

Unit IDs

1VWW|1|5|C|4596
1VWW|1|5|U|4597
1VWW|1|5|C|4598
1VWW|1|5|A|4599
1VWW|1|5|G|4600
1VWW|1|5|U|4601
1VWW|1|5|A|4602
1VWW|1|5|C|4603
*
1VWW|1|5|G|4608
1VWW|1|5|G|4609
1VWW|1|5|A|4610
1VWW|1|5|A|4611
1VWW|1|5|C|4612
1VWW|1|5|C|4613
1VWW|1|5|G|4614

Current chains

Chain 5

28S ribosomal RNA

Nearby chains