IL_93424.7

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8		9	1-9	2-7	2-8	3-6	4-5	6-7
1	IL_1VWW_095	1VWW	0.4293	6		5	LSU rRNA	C	2509	G	2510	A	2511	G	2514	*	C	2446	U	2447	G	2448	A	2449	G	2450	cWW		ntSH	tHW	cWW
2	IL_4A1B_067	4A1B	0.3569	2		1	LSU rRNA	C	1610	A	1611	A	1612	G	1615	*	C	1558	U	1559	A	1560	A	1561	G	1562	cWW		tSH	tHW	cWW
3	IL_1VX6_069	1VX6	0.3017	2		A	LSU rRNA	C	1728	A	1729	A	1730	G	1733	*	C	1681	U	1682	A	1683	A	1684	G	1685	cWW		tSH	tHW	cWW
4	IL_1S72_052	1S72	0.2903	3	UAA/GAN (H)	0	LSU rRNA	C	1483	G	1484	A	1485	G	1489	*	C	1456	U	1457	A	1458	A	1459	G	1460	cWW		tSH	tHW	cWW
5	IL_3U5H_069	3U5H	0.3118	2		5	LSU rRNA	C	1585	G	1586	A	1587	G	1590	*	C	1532	U	1533	A	1534	A	1535	G	1536	cWW		tSH	tHW	cWW
6	IL_4CUV_070	4CUV	0.2829	2		1	LSU rRNA	C	1585	G	1586	A	1587	G	1590	*	C	1532	U	1533	A	1534	A	1535	G	1536	cWW		tSH	tHW	cWW
7	IL_2QBG_054	2QBG	0.1904	1		B	LSU rRNA	C	1417	G	1418	A	1419	G	1421	*	C	1577	U	1578	A	1579	A	1580	G	1581	cWW		tSH	tHW	cWW
8	IL_4QCN_051	4QCN	0.2276	1		A	LSU rRNA	C	1463	G	1464	A	1465	G	1467	*	C	1624	U	1625	A	1626	A	1627	G	1628	cWW		tSH	tHW	cWW
9	IL_4QCN_048	4QCN	0.2277	1		A	LSU rRNA	C	1422	G	1423	A	1424	G	1426	*	C	1397	U	1398	A	1399	A	1400	G	1401	cWW		tSH	tHW	cWW
10	IL_2QBG_051	2QBG	0.2059	1		B	LSU rRNA	C	1376	G	1377	A	1378	G	1380	*	C	1351	U	1352	A	1353	A	1354	G	1355	cWW		tSH	tHW	cWW
11	IL_1S72_038	1S72	0.2252	1	UAA/GAN (H)	0	LSU rRNA	C	1257	G	1258	A	1259	A	1261	*	U	1095	U	1096	A	1097	A	1098	G	1099	cWW		tSH	tHW	cWW
12	IL_4QCN_035	4QCN	0.1950	1		A	LSU rRNA	C	1199	G	1200	A	1201	G	1203	*	C	1044	U	1045	A	1046	A	1047	G	1048	cWW		tSH	tHW	cWW
13	IL_4IOA_032	4IOA	0.1768	1	UAA/GAN	X	LSU rRNA	C	1164	G	1165	A	1166	G	1168	*	C	1009	U	1010	A	1011	A	1012	G	1013	cWW		tSH	tHW	cWW
14	IL_2QBG_036	2QBG	0.1729	1		B	LSU rRNA	C	1153	G	1154	A	1155	G	1157	*	C	998	U	999	A	1000	A	1001	G	1002	cWW		tSH	tHW	cWW
15	IL_1VW3_033	1VW3	0.0000	1		A	LSU rRNA	U	1173	G	1174	A	1175	U	1177	*	A	924	U	925	A	926	A	927	A	928	cWW		tSH	tHW	cWW
16	IL_4CUV_131	4CUV	0.2050	1		1	LSU rRNA	A	3127	G	3128	A	3129	U	3131	*	A	3103	U	3104	U	3105	A	3106	U	3107	cWW		tSH	tHW	cWW
17	IL_3U5H_126	3U5H	0.2139	1		5	LSU rRNA	A	3127	G	3128	A	3129	U	3131	*	A	3103	U	3104	U	3105	A	3106	U	3107	cWW		tSH	tHW	cWW
18	IL_4A1B_122	4A1B	0.2160	1		1	LSU rRNA	A	3116	G	3117	A	3118	U	3120	*	A	3092	U	3093	U	3094	A	3095	U	3096	cWW		tSH	ntHW	cWW
19	IL_1VWW_149	1VWW	0.2742	1		5	LSU rRNA	A	4705	G	4706	A	4707	U	4709	*	A	4681	U	4682	U	4683	A	4684	U	4685	cWW		tSH	tHW	ncWW	ncSH
20	IL_2XXA_014	2XXA	0.2577	3		G	SSRP RNA	C	31	G	32	A	33	U	37	*	A	62	U	63	A	64	A	65	G	66	cWW		ntSH	ntHW	cWW
21	IL_4CUV_054	4CUV	0.2211	1		1	LSU rRNA	C	1328	U	1329	A	1330	A	1332	*	U	1167	U	1168	A	1169	A	1170	G	1171	cWW	ntWH		tHW	cWW
22	IL_1VWW_078	1VWW	0.3259	-2		5	LSU rRNA	C	2067	C	2068	A	2069	A	2071	*	U	1905	U	1906	A	1907	A	1908	G	1909	cWW			ntHW	cWW
23	IL_4IOA_053	4IOA	0.3857	1	UAA/GAN	X	LSU rRNA	U	1431	G	1432	A	1433	G	1435	*	C	1593	U	1594	A	1595	A	1596	A	1597	cWW			tHW	cWW
24	IL_1X8W_006	1X8W	0.4160	1		A	Group I catalytic intron	U	253	G	254	C	255	G	257	*	C	216	C	217	A	218	A	219	G	220	cWW		ntSH		cWW
25	IL_4CUV_028	4CUV	0.3952	0		1	LSU rRNA	G	725	G	726	G	727	G	728	*	U	741	G	742	C	743	A	744	C	745	cWW		ntSH		ncWW
26	IL_3U5H_024	3U5H	0.3647	0		5	LSU rRNA	G	725	G	726	G	727	G	728	*	U	741	G	742	C	743	A	744	C	745	cWW		tSH	ntHS	cWW
27	IL_3U5H_124	3U5H	0.3829	2		5	LSU rRNA	U	3054	U	3055	U	3057	G	3059	*	C	3084	G	3085	A	3086	A	3087	G	3088	cWW				cWW
28	IL_1S72_092	1S72	0.3393	1	UAA/GAN variation (H)	0	LSU rRNA	U	2724	G	2725	A	2727	C	2728	*	G	2754	G	2755	U	2756	A	2757	G	2758	cWW		tSH		cWW
29	IL_4QCN_056	4QCN	0.4654	0		A	LSU rRNA	U	1566	G	1567	G	1568	U	1569	*	A	1516	G	1517	A	1518	A	1519	G	1520	cWW		tSH		cWW
30	IL_4A1B_126	4A1B	0.4671	0		1	LSU rRNA	U	3212	G	3213	A	3214	C	3215	*	G	3195	G	3196	A	3197	A	3198	G	3199	cWW		ntSH		cWW
31	IL_1VX2_006	1VX2	0.5124	2		2	SSU rRNA	U	63	A	64	G	66	A	68	*	U	81	G	82	A	83	A	84	A	85					cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAG*CUAAG	5
AGAAU*AUUAU	4
CAAAAG*CUAAG	2
CGAAAG*CUAAG	2
CGAUG*CUAAG	2
GGGG*UGCAC	2
CUCAGUAC*GGAACCG	1
CGAAAUG*CUAAG	1
CGAGA*UUAAG	1
UGAAU*AUAAA	1
CGAACCU*AUAAG	1
CUAUA*UUAAG	1
CCG*CGAG	1
UGAUG*CUAAA	1
UGCAG*CCAAG	1
UUUUUG*CGAAG	1
UGUAC*GGUAG	1
UGGU*AGAAG	1
UGAC*GGAAG	1
UACGCA*UGAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAA*UAA	6
GAA*UUA	4
GAU*UAA	3
AAAA*UAA	2
GAAA*UAA	2
GG*GCA	2
UCAGUA*GAACC	1
GAAAU*UAA	1
GAG*UAA	1
GAACC*UAA	1
UAU*UAA	1
C*GA	1
GCA*CAA	1
UUUU*GAA	1
GUA*GUA	1
GG*GAA	1
GA*GAA	1
ACGC*GAA	1

Release history

Release	1.17
Date	2014-09-04
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_93424.7	Only in the parent motif
IL_93424.6 Compare	IL_4CUV_028, IL_4IOA_053, IL_3U5H_024, IL_3U5H_124, IL_4IOA_032, IL_3U5H_126, IL_3U5H_069, IL_4CUV_131, IL_4CUV_054, IL_4CUV_070, IL_1X8W_006, IL_1S72_092, IL_4A1B_067, IL_4A1B_122, IL_4A1B_126, IL_2QBG_036, IL_1S72_052, IL_2QBG_054, IL_1S72_038, IL_2QBG_051, IL_2XXA_014, IL_1VW3_033	IL_4QCN_051, IL_1VX2_006, IL_1VWW_095, IL_1VWW_078, IL_1VWW_149, IL_4QCN_056, IL_4QCN_048, IL_4QCN_035, IL_1VX6_069	IL_4NVV_051, IL_4NVV_059, IL_4NVV_038, IL_4NVV_054

Children motifs

Child motif	Common motif instances	Only in IL_93424.7	Only in the child motif
IL_93424.8 Compare	IL_4CUV_028, IL_4IOA_053, IL_3U5H_024, IL_3U5H_124, IL_4IOA_032, IL_3U5H_126, IL_3U5H_069, IL_4QCN_048, IL_1VX6_069, IL_4CUV_131, IL_4CUV_054, IL_4CUV_070, IL_1X8W_006, IL_1S72_092, IL_4A1B_067, IL_4A1B_122, IL_4A1B_126, IL_4QCN_051, IL_2QBG_036, IL_1S72_052, IL_4QCN_056, IL_2QBG_054, IL_1S72_038, IL_2QBG_051, IL_4QCN_035, IL_2XXA_014, IL_1VW3_033	IL_1VX2_006, IL_1VWW_095, IL_1VWW_078, IL_1VWW_149	IL_4W21_152, IL_4W21_155, IL_4W21_094, IL_4W21_076

Motif IL_93424.7 Version IL_93424.7 of this group appears in releases 1.17 to 1.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_93424.7 Version IL_93424.7 of this group appears in releases 1.17 to 1.17

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Csv

Json