IL_1VWW_099

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

1VWW|1|5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VWW_099 not in the Motif Atlas

Geometric match to IL_8VTW_054

Geometric discrepancy: 0.2363

The information below is about IL_8VTW_054

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

1VWW|1|5|A|4681
1VWW|1|5|U|4682
1VWW|1|5|U|4683
1VWW|1|5|A|4684
1VWW|1|5|U|4685
*
1VWW|1|5|A|4705
1VWW|1|5|G|4706
1VWW|1|5|A|4707
1VWW|1|5|A|4708
1VWW|1|5|U|4709

Current chains

Chain 5

28S ribosomal RNA

Nearby chains