IL_1VX2_017

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAUCAA*UGACCACGG

Length

16 nucleotides

Bulged bases

1VX2|1|2|U|361, 1VX2|1|2|C|399

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10554.1

Basepair signature

cWW-L-R-R-L-L-tHS-tSS-tSS-R-cWW

Number of instances in this motif group

5

Unit IDs

1VX2|1|2|C|358
1VX2|1|2|U|359
1VX2|1|2|A|360
1VX2|1|2|U|361
1VX2|1|2|C|362
1VX2|1|2|A|363
1VX2|1|2|A|364
*
1VX2|1|2|U|396
1VX2|1|2|G|397
1VX2|1|2|A|398
1VX2|1|2|C|399
1VX2|1|2|C|400
1VX2|1|2|A|401
1VX2|1|2|C|402
1VX2|1|2|G|403
1VX2|1|2|G|404

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein eS8

Chain L

Ribosomal protein uS17

Chain X

Ribosomal protein uS12