Motif IL_10554.1 Version IL_10554.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-4 | 2-13 | 3-10 | 3-12 | 4-11 | 4-12 | 5-8 | 5-9 | 5-10 | 6-7 | 6-11 | 7-11 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VWW_091 | 1VWW | 0.5370 | -3 | 5 | 28S ribosomal RNA | G | 2328 | U | 2329 | G | 2330 | G | 2331 | A | 2332 | G | 2333 | * | C | 2302 | C | 2303 | U | 2304 | G | 2306 | A | 2307 | A | 2308 | G | 2309 | C | 2310 | cWW | ntHW | cWW | |||||||||||
| 2 | IL_1FJG_031 | 1FJG | 0.2901 | 1 | Kink-turn (H) | A | SSU rRNA | G | 683 | A | 684 | G | 685 | U | 686 | A | 687 | G | 688 | * | C | 699 | G | 700 | C | 701 | G | 703 | A | 704 | U | 705 | A | 706 | C | 707 | cWW | ncwW | tSH | tWH | tSs | tHS | cWW | ntsS | |||||
| 3 | IL_4BPP_047 | 4BPP | 0.0000 | 1 | A | 18S RRNA | A | 872 | G | 873 | U | 874 | C | 875 | A | 876 | G | 877 | * | C | 888 | U | 889 | U | 890 | G | 892 | A | 893 | U | 894 | U | 895 | U | 896 | cWW | ncWWa | tSs | tHS | cWW | tsS | ||||||||
| 4 | IL_1VX2_046 | 1VX2 | 0.2357 | 1 | 2 | 18S ribosomal RNA | C | 951 | G | 952 | C | 953 | U | 954 | A | 955 | G | 956 | * | C | 967 | U | 968 | U | 969 | G | 971 | A | 972 | C | 973 | C | 974 | G | 975 | ncWW | ntSs | tHS | cWW | ||||||||||
| 5 | IL_1VX2_017 | 1VX2 | 0.5359 | 2 | 2 | 18S ribosomal RNA | C | 358 | U | 359 | A | 360 | C | 362 | A | 363 | A | 364 | * | U | 396 | G | 397 | A | 398 | C | 400 | A | 401 | C | 402 | G | 403 | G | 404 | cWW | ncSH | ntHS | ncWw | tHS | cWW | tsS | csS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGUC*GACAGG | 1 |
| GAGUAG*CGCAGAUAC | 1 |
| AGUCAG*CUUGGAUUU | 1 |
| CGCUAG*CUUGGACCG | 1 |
| CUAUCAA*UGACCACGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGU*ACAG | 1 |
| AGUA*GCAGAUA | 1 |
| GUCA*UUGGAUU | 1 |
| GCUA*UUGGACC | 1 |
| UAUCA*GACCACG | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_10554.1 | Only in the parent motif |
|---|---|---|---|
| IL_16415.3 Compare | IL_1FJG_031, IL_4BPP_047 | IL_1VWW_091, IL_1VX2_017, IL_1VX2_046 |
Children motifs
| Child motif | Common motif instances | Only in IL_10554.1 | Only in the child motif |
|---|---|---|---|
| IL_37400.1 Compare | IL_1FJG_031, IL_4BPP_047 | IL_1VWW_091, IL_1VX2_017, IL_1VX2_046 |
- Annotations
-
- (4)
- Kink-turn (H) (1)
- Basepair signature
- cWW-L-R-R-L-L-tHS-tSS-tSS-R-cWW
- Heat map statistics
- Min 0.24 | Avg 0.39 | Max 0.77
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