IL_1VX2_041

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGACGGCC*GAAUGUUUU

Length

17 nucleotides

Bulged bases

1VX2|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20608.1

Basepair signature

cWW-L-cSH-R-L-L-cWS-cWW-bif-cWW

Number of instances in this motif group

1

Unit IDs

1VX2|1|2|G|924
1VX2|1|2|G|925
1VX2|1|2|A|926
1VX2|1|2|C|927
1VX2|1|2|G|928
1VX2|1|2|G|929
1VX2|1|2|C|930
1VX2|1|2|C|931
*
1VX2|1|2|G|1010
1VX2|1|2|A|1011
1VX2|1|2|A|1012
1VX2|1|2|U|1013
1VX2|1|2|G|1014
1VX2|1|2|U|1015
1VX2|1|2|U|1016
1VX2|1|2|U|1017
1VX2|1|2|U|1018

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein eS1

Chain N

Ribosomal protein uS15

Chain b

Ribosomal protein eS27