IL_1VX2_043

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUC*GGACCAGAGCGAAAGCAUUU

Length

24 nucleotides

Bulged bases

1VX2|1|2|G|991

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67399.1

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

1VX2|1|2|A|938
1VX2|1|2|U|939
1VX2|1|2|U|940
1VX2|1|2|C|941
*
1VX2|1|2|G|985
1VX2|1|2|G|986
1VX2|1|2|A|987
1VX2|1|2|C|988
1VX2|1|2|C|989
1VX2|1|2|A|990
1VX2|1|2|G|991
1VX2|1|2|A|992
1VX2|1|2|G|993
1VX2|1|2|C|994
1VX2|1|2|G|995
1VX2|1|2|A|996
1VX2|1|2|A|997
1VX2|1|2|A|998
1VX2|1|2|G|999
1VX2|1|2|C|1000
1VX2|1|2|A|1001
1VX2|1|2|U|1002
1VX2|1|2|U|1003
1VX2|1|2|U|1004

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein eS1

Chain N

Ribosomal protein uS15

Chain O

Ribosomal protein uS11

Chain a

Ribosomal protein eS26