Motif IL_67399.1 Version IL_67399.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-6 | 3-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BPP_084 | 4BPP | 0.7612 | 0 | A | SSU rRNA | G | 1621 | U | 1622 | A | 1623 | G | 1624 | * | C | 1701 | A | 1702 | A | 1703 | C | 1704 | cWW | ntSH | ntHS | cWW | ||
| 2 | IL_1S72_037 | 1S72 | 0.5497 | 0 | 0 | LSU rRNA | A | 965 | U | 966 | U | 967 | G | 968 | * | C | 1000 | U | 1001 | G | 1002 | U | 1003 | cWW | cSW | cWw | cWW | ||
| 3 | IL_3J7A_035 | 3J7A | 0.5239 | 1 | A | SSU rRNA | U | 922 | U | 923 | C | 925 | G | 926 | * | U | 877 | G | 878 | A | 879 | A | 880 | ncWW | ncWW | ncWW | |||
| 4 | IL_1VX2_043 | 1VX2 | 0.0000 | 16 | 2 | SSU rRNA | A | 938 | U | 939 | U | 940 | C | 941 | * | G | 985 | U | 1002 | U | 1003 | U | 1004 | cWW | cwW | ncwW | cWW | ||
| 5 | IL_1VWW_106 | 1VWW | 0.5079 | 3 | 5 | LSU rRNA | C | 2702 | G | 2703 | C | 2704 | G | 2705 | * | C | 2710 | G | 2712 | C | 2713 | G | 2714 | cWW | ncWw | cWW | |||
| 6 | IL_2Y9B_002 | 2Y9B | 0.6463 | 0 | V | HOMO SAPIENS U4A SNRNA | U | 805 | G | 806 | A | 807 | C | 808 | * | G | 821 | G | 822 | C | 823 | A | 824 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAG*CAAC | 1 |
| AUUG*CUGU | 1 |
| UUACG*UGAA | 1 |
| AUUC*GGACCAGAGCGAAAGCAUUU | 1 |
| CACCC*GGGUCG | 1 |
| UGAC*GGCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*AA | 1 |
| UU*UG | 1 |
| UAC*GA | 1 |
| UU*GACCAGAGCGAAAGCAUU | 1 |
| ACC*GGUC | 1 |
| GA*GC | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_67399.1 | Only in the parent motif |
|---|---|---|---|
| IL_47758.3 Compare | IL_1S72_037, IL_4BPP_084 | IL_1VX2_043, IL_1VWW_106, IL_3J7A_035, IL_2Y9B_002 | IL_1DUQ_001, IL_4CUV_105, IL_1CSL_001 |
| IL_54450.1 Compare | IL_2Y9B_002 | IL_1VX2_043, IL_3J7A_035, IL_1VWW_106, IL_1S72_037, IL_4BPP_084 |
Children motifs
| Child motif | Common motif instances | Only in IL_67399.1 | Only in the child motif |
|---|---|---|---|
| IL_70108.1 Compare | IL_3J7A_035, IL_1S72_037 | IL_1VX2_043, IL_2Y9B_002, IL_1VWW_106, IL_4BPP_084 | IL_4TZZ_005, IL_4CUV_105, IL_4CUX_095 |
| IL_32815.1 Compare | IL_2Y9B_002, IL_4BPP_084 | IL_1VX2_043, IL_3J7A_035, IL_1VWW_106, IL_1S72_037 |
- Annotations
-
- (6)
- Basepair signature
- cWW-L-R-cWW-cWW
- Heat map statistics
- Min 0.51 | Avg 0.57 | Max 1.02
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