Motif IL_67399.1 Version IL_67399.1 of this group appears in releases 1.17 to 1.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	1-8	2-6	2-7	3-6	3-7	4-5
1	IL_4BPP_084	4BPP	0.7612	0	A	18S RRNA	G	1621	U	1622	A	1623	G	1624	*	C	1701	A	1702	A	1703	C	1704	cWW		ntSH	ntHS		cWW
2	IL_1S72_037	1S72	0.5497	0	0	LSU rRNA	A	965	U	966	U	967	G	968	*	C	1000	U	1001	G	1002	U	1003	cWW		cSW	cWw		cWW
3	IL_3J7A_035	3J7A	0.5239	1	A	SSU rRNA	U	922	U	923	C	925	G	926	*	U	877	G	878	A	879	A	880	ncWW				ncWW	ncWW
4	IL_1VX2_043	1VX2	0.0000	16	2	18S ribosomal RNA	A	938	U	939	U	940	C	941	*	G	985	U	1002	U	1003	U	1004	cWW		cwW	ncwW		cWW
5	IL_1VWW_106	1VWW	0.5079	3	5	28S ribosomal RNA	C	2702	G	2703	C	2704	G	2705	*	C	2710	G	2712	C	2713	G	2714	cWW	ncWw				cWW
6	IL_2Y9B_002	2Y9B	0.6463	0	V	HOMO SAPIENS U4A SNRNA	U	805	G	806	A	807	C	808	*	G	821	G	822	C	823	A	824	cWW		cWW	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUAG*CAAC	1
AUUG*CUGU	1
UUACG*UGAA	1
AUUC*GGACCAGAGCGAAAGCAUUU	1
CACCC*GGGUCG	1
UGAC*GGCA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UA*AA	1
UU*UG	1
UAC*GA	1
UU*GACCAGAGCGAAAGCAUU	1
ACC*GGUC	1
GA*GC	1

Release history

Release	1.17
Date	2014-09-04
Status	New id, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_67399.1	Only in the parent motif
IL_47758.3 Compare	IL_1S72_037, IL_4BPP_084	IL_1VX2_043, IL_1VWW_106, IL_3J7A_035, IL_2Y9B_002	IL_1DUQ_001, IL_4CUV_105, IL_1CSL_001
IL_54450.1 Compare	IL_2Y9B_002	IL_1VX2_043, IL_3J7A_035, IL_1VWW_106, IL_1S72_037, IL_4BPP_084

Children motifs

Child motif	Common motif instances	Only in IL_67399.1	Only in the child motif
IL_70108.1 Compare	IL_3J7A_035, IL_1S72_037	IL_1VX2_043, IL_2Y9B_002, IL_1VWW_106, IL_4BPP_084	IL_4TZZ_005, IL_4CUV_105, IL_4CUX_095
IL_32815.1 Compare	IL_2Y9B_002, IL_4BPP_084	IL_1VX2_043, IL_3J7A_035, IL_1VWW_106, IL_1S72_037

Annotations: (6)
Basepair signature: cWW-L-R-cWW-cWW
Heat map statistics: Min 0.51 | Avg 0.57 | Max 1.02

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Coloring options: Nucleotide numbers

Motif IL_67399.1 Version IL_67399.1 of this group appears in releases 1.17 to 1.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_67399.1 Version IL_67399.1 of this group appears in releases 1.17 to 1.17

Download

Csv

Json