IL_1VX2_070

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUACG*CGCGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49203.1

Basepair signature

cWW-cWW-cSW-cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

1VX2|1|2|C|1559
1VX2|1|2|U|1560
1VX2|1|2|A|1561
1VX2|1|2|C|1562
1VX2|1|2|G|1563
*
1VX2|1|2|C|1572
1VX2|1|2|G|1573
1VX2|1|2|C|1574
1VX2|1|2|G|1575
1VX2|1|2|G|1576

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

Ribosomal protein eS19