Motif IL_49203.1 Version IL_49203.1 of this group appears in releases 1.17 to 1.17

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9		10	1-9	1-10	2-9	3-4	3-8	3-9	4-7	5-6
1	IL_4CUX_004	4CUX	0.8094	1		2	18S RRNA	U	37	C	38	A	39	A	40	A	41	*	U	466	G	467	C	469	A	470	A	471		cWW	cWW				ntHS	cWW
2	IL_3U5F_003	3U5F	0.7836	1		6	18S rRNA	U	37	C	38	A	39	A	40	A	41	*	U	466	G	467	C	469	A	470	A	471		cWW	cWW				tHS	cWW
3	IL_3J7A_002	3J7A	0.7650	1	Triple sheared related (H)	A	SSU rRNA	U	37	C	38	A	39	A	40	A	41	*	U	472	G	473	C	475	A	476	A	477		cWW	cWW		ntSH		tHS	cWW
4	IL_1VX2_070	1VX2	0.4593	0		2	18S ribosomal RNA	C	1572	G	1573	C	1574	G	1575	G	1576	*	C	1559	U	1560	A	1561	C	1562	G	1563		cWW						cWW
5	IL_3J7A_081	3J7A	0.3661	0		A	SSU rRNA	C	1979	A	1980	A	1981	G	1982	A	1983	*	U	2007	U	2008	C	2009	U	2010	G	2011		cWW			ncWWa			cWW
6	IL_1VWW_135	1VWW	0.3511	0		5	28S ribosomal RNA	U	4312	A	4313	C	4314	A	4315	G	4316	*	C	4294	U	4295	U	4296	G	4297	A	4298								cWW
7	IL_1VX6_023	1VX6	0.3408	0		A	28S ribosomal RNA	U	628	A	629	U	630	U	631	U	632	*	A	523	U	524	U	525	U	526	A	527		cWW	ncWW		cwW		cWw	cWW
8	IL_1VX6_082	1VX6	0.0000	0		A	28S ribosomal RNA	C	2036	U	2037	U	2038	U	2039	G	2040	*	C	2069	U	2070	U	2071	U	2072	G	2073		ncWW						ncWW
9	IL_1VW3_089	1VW3	0.2799	0		A	21S ribosomal RNA	A	2978	U	2979	A	2980	U	2981	U	3002	*	A	3007	U	3008	A	3009	U	3010	U	3011		cWW			cWw		ncwW	cWW
10	IL_4BPP_046	4BPP	0.4204	0		A	18S RRNA	A	901	G	902	G	903	A	904	C	905	*	G	863	U	864	A	865	U	866	U	867		cWW	cWWa		cWW			cWW
11	IL_1VX6_080	1VX6	0.3968	0		A	28S ribosomal RNA	A	1906	A	1907	U	1908	U	1909	C	1910	*	G	1959	U	1960	U	1961	U	1962	U	1963		cWW	cWW		ncwW	ncSW
12	IL_1VWW_147	1VWW	0.4600	0		5	28S ribosomal RNA	G	4658	G	4659	G	4660	G	4661	C	4662	*	G	4637	U	4638	G	4639	C	4640	U	4641		ncWW						cWW
13	IL_1VX2_077	1VX2	0.4118	0		2	18S ribosomal RNA	G	1727	U	1728	U	1729	U	1730	A	1731	*	U	1803	U	1804	G	1805	A	1806	C	1807	ncWW			ncSH				ncWW
14	IL_4CUX_026	4CUX	0.6270	1		2	18S RRNA	C	479	G	480	A	481	U	482	A	483	*	U	504	A	505	U	507	U	508	G	509		ncWW	ncWW					ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCAAA*UGACAA	3
CGCGG*CUACG	1
CAAGA*UUCUG	1
CUUGA*UACAG	1
UAUUU*AUUUA	1
CUUUG*CUUUG	1
AUAUU*AUAUU	1
AGGAC*GUAUU	1
AAUUC*GUUUU	1
GUGCU*GGGGC	1
GUUUA*UUGAC	1
CGAUA*UAAUUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAA*GACA	3
AUU*UUU	2
GCG*UAC	1
AAG*UCU	1
UUG*ACA	1
UUU*UUU	1
UAU*UAU	1
GGA*UAU	1
UGC*GGG	1
UUU*UGA	1
GAU*AAUU	1

Release history

Release	1.17
Date	2014-09-04
Status	New id, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_49203.1	Only in the parent motif
IL_96952.1 Compare	IL_4CUX_026, IL_4CUX_004, IL_4BPP_046, IL_3U5F_003, IL_1VW3_089	IL_1VX2_070, IL_1VX6_023, IL_3J7A_081, IL_1VWW_147, IL_3J7A_002, IL_1VX6_082, IL_1VX6_080, IL_1VWW_135, IL_1VX2_077	IL_4CUX_006, IL_4CUX_047

Children motifs

Child motif	Common motif instances	Only in IL_49203.1	Only in the child motif
IL_68859.1 Compare	IL_4CUX_026, IL_3J7A_081, IL_1VX6_023, IL_4CUX_004, IL_3J7A_002, IL_3U5F_003, IL_4BPP_046, IL_1VX6_082, IL_1VX6_080, IL_1VW3_089	IL_1VWW_147, IL_1VX2_070, IL_1VX2_077, IL_1VWW_135	IL_4W23_070, IL_4W23_053, IL_4W21_163, IL_4CUX_006, IL_4CUX_047, IL_4W23_044

Annotations: (13)
Triple sheared related (H) (1)
Basepair signature: cWW-cWW-cSW-cWW-tHS-cWW
Heat map statistics: Min 0.13 | Avg 0.55 | Max 0.92

Help

Coloring options: Nucleotide numbers

Copyright 2025 BGSU RNA group. Page generated in 1.51 s