IL_1VX2_074

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCGCUA*UAAAAGUC

Length

15 nucleotides

Bulged bases

None detected

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01551.1

Basepair signature

cWW-L-R-R-R-R-R-L-L-L-cWW

Number of instances in this motif group

6

Unit IDs

1VX2|1|2|G|1706
1VX2|1|2|U|1707
1VX2|1|2|C|1708
1VX2|1|2|G|1709
1VX2|1|2|C|1710
1VX2|1|2|U|1711
1VX2|1|2|A|1712
*
1VX2|1|2|U|1821
1VX2|1|2|A|1822
1VX2|1|2|A|1823
1VX2|1|2|A|1824
1VX2|1|2|A|1825
1VX2|1|2|G|1826
1VX2|1|2|U|1827
1VX2|1|2|C|1828

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 4

Messenger RNA

Chain 5

A/P tRNA

Chain X

Ribosomal protein uS12

Chain e

Ribosomal protein eS30