IL_1VX3_141

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUUGC*GGAACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_141 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.2899

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1VX3|1|5|U|4577
1VX3|1|5|G|4578
1VX3|1|5|U|4579
1VX3|1|5|U|4580
1VX3|1|5|G|4581
1VX3|1|5|C|4582
*
1VX3|1|5|G|4721
1VX3|1|5|G|4722
1VX3|1|5|A|4723
1VX3|1|5|A|4724
1VX3|1|5|C|4725
1VX3|1|5|G|4726

Current chains

Chain 5

28S ribosomal RNA

Nearby chains