IL_1VX3_200

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGCUU*AAUGGGGC

Length

14 nucleotides

Bulged bases

1VX3|1|5|A|4656, 1VX3|1|5|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_200 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.3813

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1VX3|1|5|G|4637
1VX3|1|5|U|4638
1VX3|1|5|G|4639
1VX3|1|5|C|4640
1VX3|1|5|U|4641
1VX3|1|5|U|4642
*
1VX3|1|5|A|4655
1VX3|1|5|A|4656
1VX3|1|5|U|4657
1VX3|1|5|G|4658
1VX3|1|5|G|4659
1VX3|1|5|G|4660
1VX3|1|5|G|4661
1VX3|1|5|C|4662

Current chains

Chain 5

28S ribosomal RNA

Nearby chains