IL_1VX6_045

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGGUAG*CCAAUAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73281.2

Basepair signature

cWW-tSH-tHW-L-cSH-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

1VX6|1|A|C|1113
1VX6|1|A|A|1114
1VX6|1|A|G|1115
1VX6|1|A|G|1116
1VX6|1|A|U|1117
1VX6|1|A|A|1118
1VX6|1|A|G|1119
*
1VX6|1|A|C|1175
1VX6|1|A|C|1176
1VX6|1|A|A|1177
1VX6|1|A|A|1178
1VX6|1|A|U|1179
1VX6|1|A|A|1180
1VX6|1|A|G|1181

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA