IL_1VX6_048

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96532.1

Basepair signature

cWW-cWW-cWS-cWW

Number of instances in this motif group

7

Unit IDs

1VX6|1|A|A|1128
1VX6|1|A|U|1129
1VX6|1|A|U|1130
1VX6|1|A|A|1131
*
1VX6|1|A|U|1164
1VX6|1|A|U|1165
1VX6|1|A|C|1166
1VX6|1|A|U|1167

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA