Motif IL_96532.1 Version IL_96532.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4QCN_106 | 4QCN | 0.7155 | 1 | A | 23S Ribosomal RNA | G | 2853 | G | 2854 | G | 2855 | G | 2856 | * | C | 2880 | C | 2881 | G | 2882 | C | 2884 | cWW | cWS | cWW | ||
| 2 | IL_2OE5_002 | 2OE5 | 0.0000 | 1 | A+B | RNA (16-mer) + RNA (17-mer) | C | 1407 | G | 1408 | C | 1409 | U | 1410 | * | A | 1490 | A | 1492 | A | 1493 | G | 1494 | cWW | cWS | cWW | ||
| 3 | IL_2FQN_003 | 2FQN | 0.0955 | 1 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | A | 18 | G | 19 | cWW | cWS | cWW | ||
| 4 | IL_3BNQ_002 | 3BNQ | 0.5981 | 1 | A+B | A site of human mitochondrial ribosome, A chain | C | 7 | A | 8 | C | 9 | C | 10 | * | G | 15 | C | 16 | A | 18 | G | 19 | cWW | cwW | ncBW | cWW | |
| 5 | IL_4CUV_048 | 4CUV | 0.7468 | 2 | 1 | 25S RRNA | U | 1034 | G | 1035 | A | 1036 | C | 1037 | * | G | 1013 | U | 1014 | U | 1015 | G | 1018 | cWW | ncWB | ncWW | cWW | |
| 6 | IL_1VX6_048 | 1VX6 | 0.7658 | 0 | A | 28S ribosomal RNA | U | 1164 | U | 1165 | C | 1166 | U | 1167 | * | A | 1128 | U | 1129 | U | 1130 | A | 1131 | cWW | cwW | ncWS | cWW | |
| 7 | IL_4W23_043 | 4W23 | 0.8432 | 1 | 2 | 18S ribosomal RNA | G | 924 | G | 925 | A | 926 | C | 927 | * | G | 1014 | U | 1015 | U | 1017 | U | 1018 | ncWW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCU*AAAAG | 2 |
| GGGG*CCGAC | 1 |
| CACC*GCAAG | 1 |
| GUUCCG*UGAC | 1 |
| UUCU*AUUA | 1 |
| GGAC*GUUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GC*AAA | 2 |
| GG*CGA | 1 |
| AC*CAA | 1 |
| UUCC*GA | 1 |
| UC*UU | 1 |
| GA*UUU | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_96532.1 | Only in the parent motif |
|---|---|---|---|
| IL_72062.1 Compare | IL_2FQN_003, IL_2OE5_002, IL_4CUV_048, IL_1VX6_048 | IL_4W23_043, IL_3BNQ_002, IL_4QCN_106 | IL_4CUV_105 |
| IL_62615.1 Compare | IL_4QCN_106 | IL_2FQN_003, IL_4CUV_048, IL_2OE5_002, IL_1VX6_048, IL_4W23_043, IL_3BNQ_002 | IL_3MEI_004, IL_2O3V_003, IL_3U5F_017 |
| IL_77920.1 Compare | IL_3BNQ_002 | IL_2FQN_003, IL_4CUV_048, IL_4QCN_106, IL_1VX6_048, IL_4W23_043, IL_2OE5_002 | IL_3J7A_010, IL_1NUV_002, IL_1NUV_003, IL_429D_002, IL_2QBG_108 |
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cWW-cWS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.59 | Max 1.00
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