#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-56-7
1 IL_4QCN_1064QCN0.71551A23S Ribosomal RNAG2853G2854G2855G2856*C2880C2881G2882C2884cWWcWScWW
2 IL_2OE5_0022OE50.00001A+BRNA (16-mer) + RNA (17-mer)C1407G1408C1409U1410*A1490A1492A1493G1494cWWcWScWW
3 IL_2FQN_0032FQN0.09551B+ARNA (23-mer)C30G31C32U33*A15A17A18G19cWWcWScWW
4 IL_3BNQ_0023BNQ0.59811A+BA site of human mitochondrial ribosome, A chainC7A8C9C10*G15C16A18G19cWWcwWncBWcWW
5 IL_4CUV_0484CUV0.74682125S RRNAU1034G1035A1036C1037*G1013U1014U1015G1018cWWncWBncWWcWW
6 IL_1VX6_0481VX60.76580A28S ribosomal RNAU1164U1165C1166U1167*A1128U1129U1130A1131cWWcwWncWScWW
7 IL_4W23_0434W230.84321218S ribosomal RNAG924G925A926C927*G1014U1015U1017U1018ncWWcWWncSH

3D structures

Complete motif including flanking bases
SequenceCounts
CGCU*AAAAG2
GGGG*CCGAC1
CACC*GCAAG1
GUUCCG*UGAC1
UUCU*AUUA1
GGAC*GUUUU1
Non-Watson-Crick part of the motif
SequenceCounts
GC*AAA2
GG*CGA1
AC*CAA1
UUCC*GA1
UC*UU1
GA*UUU1
Annotations
  • (7)
  • Basepair signature
    cWW-cWW-cWS-cWW
    Heat map statistics
    Min 0.10 | Avg 0.59 | Max 1.00
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.4869 s