IL_1VX6_060
3D structure
- PDB id
- 1VX6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUCCCAUAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 1VX6|1|A|U|1324, 1VX6|1|A|A|1430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81280.1
- Basepair signature
- cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
1VX6|1|A|G|1322
1VX6|1|A|A|1323
1VX6|1|A|U|1324
1VX6|1|A|C|1325
1VX6|1|A|C|1326
1VX6|1|A|C|1327
1VX6|1|A|A|1328
1VX6|1|A|U|1329
1VX6|1|A|A|1330
1VX6|1|A|A|1331
1VX6|1|A|A|1332
1VX6|1|A|A|1333
*
1VX6|1|A|U|1427
1VX6|1|A|G|1428
1VX6|1|A|A|1429
1VX6|1|A|A|1430
1VX6|1|A|A|1431
1VX6|1|A|A|1432
1VX6|1|A|U|1433
1VX6|1|A|G|1434
1VX6|1|A|G|1435
1VX6|1|A|A|1436
1VX6|1|A|U|1437
1VX6|1|A|G|1438
1VX6|1|A|G|1439
1VX6|1|A|C|1440
1VX6|1|A|G|1441
1VX6|1|A|C|1442
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA
Coloring options: