IL_1VX6_079

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGAAUC*GGAGAAG

Length

14 nucleotides

Bulged bases

1VX6|1|A|U|1873, 1VX6|1|A|A|1886

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37053.4

Basepair signature

cWW-tSH-tSH-tHS-tSS-L-R-cWW

Number of instances in this motif group

5

Unit IDs

1VX6|1|A|U|1868
1VX6|1|A|G|1869
1VX6|1|A|G|1870
1VX6|1|A|A|1871
1VX6|1|A|A|1872
1VX6|1|A|U|1873
1VX6|1|A|C|1874
*
1VX6|1|A|G|1884
1VX6|1|A|G|1885
1VX6|1|A|A|1886
1VX6|1|A|G|1887
1VX6|1|A|A|1888
1VX6|1|A|A|1889
1VX6|1|A|G|1890

Current chains

Chain A

28S ribosomal RNA

Nearby chains