Motif IL_37053.4 Version IL_37053.4 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-4 | 3-10 | 4-7 | 4-9 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_058 | 1S72 | 0.5756 | 1 | Kink-turn (H) | 0 | LSU rRNA | U | 1587 | G | 1588 | G | 1589 | A | 1590 | A | 1591 | G | 1592 | * | C | 1602 | A | 1603 | G | 1605 | A | 1606 | A | 1607 | G | 1608 | cWW | tSH | ntSH | tSs | ntHS | cWW | |
| 2 | IL_4A1B_077 | 4A1B | 0.4302 | 2 | 1 | 26S RRNA | U | 1735 | G | 1736 | A | 1737 | A | 1738 | A | 1739 | U | 1741 | * | A | 1751 | G | 1752 | G | 1754 | A | 1755 | U | 1756 | A | 1757 | cWW | tSH | ntSH | tSs | tHS | cWW | ||
| 3 | IL_4W21_103 | 4W21 | 0.2599 | 2 | 5 | 28S ribosomal RNA | U | 2656 | G | 2657 | G | 2658 | A | 2659 | A | 2660 | G | 2662 | * | C | 2672 | G | 2673 | G | 2675 | A | 2676 | G | 2677 | A | 2678 | ncSH | tHS | ncWW | |||||
| 4 | IL_1VX6_079 | 1VX6 | 0.0000 | 2 | A | 28S ribosomal RNA | U | 1868 | G | 1869 | G | 1870 | A | 1871 | A | 1872 | C | 1874 | * | G | 1884 | G | 1885 | G | 1887 | A | 1888 | A | 1889 | G | 1890 | cWW | tSH | ntSH | tSs | tHS | cWW | ||
| 5 | IL_4CUV_080 | 4CUV | 0.1749 | 2 | 1 | 25S RRNA | C | 1711 | G | 1712 | G | 1713 | A | 1714 | A | 1715 | U | 1717 | * | G | 1727 | G | 1728 | G | 1730 | A | 1731 | U | 1732 | G | 1733 | cWW | ntSH | tSs | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGAAG*CAGGAAG | 1 |
| UGAAAUU*AGAGAUA | 1 |
| UGGAAUG*CGAGAGA | 1 |
| UGGAAUC*GGAGAAG | 1 |
| CGGAAUU*GGAGAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAA*AGGAA | 1 |
| GAAAU*GAGAU | 1 |
| GGAAU*GAGAG | 1 |
| GGAAU*GAGAA | 1 |
| GGAAU*GAGAU | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_37053.4 | Only in the parent motif |
|---|---|---|---|
| IL_37053.3 Compare | IL_4A1B_077, IL_1S72_058, IL_4CUV_080, IL_1VX6_079 | IL_4W21_103 | IL_3U5H_081 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Kink-turn (H) (1)
- Basepair signature
- cWW-tSH-tSH-tHS-tSS-L-R-cWW
- Heat map statistics
- Min 0.17 | Avg 0.34 | Max 0.60
Coloring options: