IL_1VX6_091

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAAAG*UAUUAACA

Length

15 nucleotides

Bulged bases (A, C, G, U)

2453A, 2468U, 2472C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15702.2

Basepair signature

cWW-R-tSS-tWW-tWW-cWW

Number of instances in this motif group

5

Unit IDs

1VX6|1|A|U|2449
1VX6|1|A|G|2450
1VX6|1|A|A|2451
1VX6|1|A|A|2452
1VX6|1|A|A|2453
1VX6|1|A|A|2454
1VX6|1|A|G|2455
*
1VX6|1|A|U|2466
1VX6|1|A|A|2467
1VX6|1|A|U|2468
1VX6|1|A|U|2469
1VX6|1|A|A|2470
1VX6|1|A|A|2471
1VX6|1|A|C|2472
1VX6|1|A|A|2473

Current chains

Chain A

28S ribosomal RNA

Nearby chains