Motif IL_15702.2 Version IL_15702.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-4 | 1-11 | 2-9 | 3-8 | 4-7 | 5-6 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4W21_117 | 4W21 | 0.1476 | 3 | 5 | C | 3660 | G | 3661 | A | 3662 | G | 3664 | G | 3665 | * | U | 3677 | G | 3678 | U | 3680 | G | 3681 | A | 3682 | G | 3684 | cWW | ntSS | ntWW | tWW | cWW | |
| 2 | IL_3U5H_090 | 3U5H | 0.0778 | 3 | 5 | C | 2156 | G | 2157 | A | 2158 | G | 2160 | G | 2161 | * | U | 2173 | G | 2174 | U | 2176 | G | 2177 | A | 2178 | G | 2180 | cWW | tSS | tWW | tWW | cWW | |
| 3 | IL_4CUV_090 | 4CUV | 0.0000 | 3 | 1 | C | 2156 | G | 2157 | A | 2158 | G | 2160 | G | 2161 | * | U | 2173 | G | 2174 | U | 2176 | G | 2177 | A | 2178 | G | 2180 | cWW | tSS | tWW | tWW | cWW | |
| 4 | IL_1VX6_091 | 1VX6 | 0.1060 | 4 | A | U | 2449 | G | 2450 | A | 2451 | A | 2454 | G | 2455 | * | U | 2466 | A | 2467 | U | 2469 | A | 2470 | A | 2471 | A | 2473 | cWW | tWW | tWW | cWW | ||
| 5 | IL_4A1B_085 | 4A1B | 0.1300 | 3 | 1 | U | 2152 | G | 2153 | A | 2154 | G | 2156 | G | 2157 | * | U | 2168 | G | 2169 | U | 2171 | G | 2172 | A | 2173 | A | 2175 | ncSs | cWW | tSS | tWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAUGG*UGUUGACG | 2 |
| CGAAGG*UGUUGACG | 1 |
| UGAAAAG*UAUUAACA | 1 |
| UGACGG*UGAUGACA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUG*GUUGAC | 2 |
| GAAG*GUUGAC | 1 |
| GAAAA*AUUAAC | 1 |
| GACG*GAUGAC | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_15702.2 | Only in the parent motif |
|---|---|---|---|
| IL_15702.1 Compare | IL_1VX6_091, IL_4CUV_090, IL_3U5H_090, IL_4A1B_085 | IL_4W21_117 | IL_1VWW_119 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-R-tSS-tWW-tWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.11 | Max 0.20
Coloring options: