IL_1VX6_097

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

1VX6|1|A|A|2574, 1VX6|1|A|C|2580, 1VX6|1|A|C|2599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15123.3

Basepair signature

cWW-L-R-cHW-L-L-L-L-L-cWW

Number of instances in this motif group

6

Unit IDs

1VX6|1|A|C|2570
1VX6|1|A|C|2571
1VX6|1|A|A|2572
1VX6|1|A|A|2573
1VX6|1|A|A|2574
1VX6|1|A|U|2575
1VX6|1|A|G|2576
1VX6|1|A|C|2577
1VX6|1|A|C|2578
1VX6|1|A|U|2579
1VX6|1|A|C|2580
1VX6|1|A|G|2581
*
1VX6|1|A|C|2597
1VX6|1|A|G|2598
1VX6|1|A|C|2599
1VX6|1|A|G|2600

Current chains

Chain A

28S ribosomal RNA

Nearby chains