IL_1VX6_127

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUAAU*AGAAAC

Length

12 nucleotides

Bulged bases

1VX6|1|A|A|3515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92122.2

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

10

Unit IDs

1VX6|1|A|G|3486
1VX6|1|A|A|3487
1VX6|1|A|U|3488
1VX6|1|A|A|3489
1VX6|1|A|A|3490
1VX6|1|A|U|3491
*
1VX6|1|A|A|3512
1VX6|1|A|G|3513
1VX6|1|A|A|3514
1VX6|1|A|A|3515
1VX6|1|A|A|3516
1VX6|1|A|C|3517

Current chains

Chain A

28S ribosomal RNA

Nearby chains