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Motif IL_92122.2 Version IL_92122.2 of this group appears in releases 1.18 to 1.18

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5 6break 7 8 9 10 111-112-103-95-86-7
1 IL_2QBG_1052QBG0.21721B23S rRNAG2737A2738U2739A2740A2741G2742*C2762G2763A2764A2766C2767cWWcwWtWHtHScWW
2 IL_4A1B_0544A1B0.18271126S RRNAG1193A1194U1195A1196A1197G1198*C1355G1356A1357A1359C1360cWWcwWtWHtHScWW
3 IL_1VX6_0561VX60.17081A28S ribosomal RNAG1294A1295U1296A1297A1298G1299*C1456G1457A1458A1460C1461cWWcwWtWHtHScWW
4 IL_1VX6_1271VX60.12631A28S ribosomal RNAG3486A3487U3488A3489A3490U3491*A3512G3513A3514A3516C3517cWWcwWtWHtHScWW
5 IL_4IOA_1004IOA0.06991UAA/GAN with extra cWW (H)X LSU rRNAG2717A2718U2719A2720A2721C2722*G2742G2743A2744G2746C2747cWWcWWtWHtHScWW
6 IL_4QCN_1044QCN0.00001A23S Ribosomal RNAG2750A2751U2752A2753A2754C2755*G2775G2776A2777G2779C2780cWWcWWtWHtHScWW
7 IL_1VW3_0901VW30.12501A21S ribosomal RNAA3073A3074U3075A3076A3077A3078*U3099G3100A3101G3103U3104cWWcWWtWHtHScWW
8 IL_1S72_0941S720.18461UAA/GAN with extra cWW (H)0 LSU rRNAG2772G2773U2774A2775A2776G2777*C2797G2798A2799A2801C2802cWWcWWtWHtHScWW
9 IL_1S72_0191S720.458200 LSU rRNAA562C563G564A565A566U567*A591G592A593C594U595cWWcWBtHScWW
10 IL_4W21_0504W210.61420528S ribosomal RNAG1455C1456G1457C1458A1459C1460*G1425G1426A1427U1428C1429cWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAUAAG*CGAUAC2
GAUAAC*GGAAGC2
GAUAAG*CGAAAC1
GAUAAU*AGAAAC1
AAUAAA*UGAAGU1
GGUAAG*CGAAAC1
ACGAAU*AGACU1
GCGCAC*GGAUC1
Non-Watson-Crick part of the motif
SequenceCounts
AUAA*GAAG3
AUAA*GAAA2
AUAA*GAUA2
GUAA*GAAA1
CGAA*GAC1
CGCA*GAU1

Release history

Release1.18
Date2014-10-07
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_92122.2Only in the parent motif
IL_92122.1
Compare		IL_1S72_019, IL_2QBG_105, IL_1VW3_090, IL_1VX6_127, IL_1S72_094, IL_4QCN_104, IL_4IOA_100, IL_1VX6_056, IL_4A1B_054IL_4W21_050IL_1VWW_054

Children motifs

This motif has no children motifs.
Annotations
  • (8)
  • UAA/GAN with extra cWW (H) (2)
    • Basepair signature
    cWW-cWW-tWH-L-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.29 | Max 0.74
    Help

    Coloring options:

    IL_2QBG_105:IL_2QBG_105 = 0IL_2QBG_105:IL_4A1B_054 = 0.1578IL_2QBG_105:IL_1VX6_056 = 0.1617IL_2QBG_105:IL_1VX6_127 = 0.2267IL_2QBG_105:IL_4IOA_100 = 0.2128IL_2QBG_105:IL_4QCN_104 = 0.2172IL_2QBG_105:IL_1VW3_090 = 0.1852IL_2QBG_105:IL_1S72_094 = 0.2262IL_2QBG_105:IL_1S72_019 = 0.4942IL_2QBG_105:IL_4W21_050 = 0.7443IL_4A1B_054:IL_2QBG_105 = 0.1578IL_4A1B_054:IL_4A1B_054 = 0IL_4A1B_054:IL_1VX6_056 = 0.0985IL_4A1B_054:IL_1VX6_127 = 0.168IL_4A1B_054:IL_4IOA_100 = 0.1999IL_4A1B_054:IL_4QCN_104 = 0.1827IL_4A1B_054:IL_1VW3_090 = 0.181IL_4A1B_054:IL_1S72_094 = 0.2212IL_4A1B_054:IL_1S72_019 = 0.5184IL_4A1B_054:IL_4W21_050 = 0.6951IL_1VX6_056:IL_2QBG_105 = 0.1617IL_1VX6_056:IL_4A1B_054 = 0.0985IL_1VX6_056:IL_1VX6_056 = 0IL_1VX6_056:IL_1VX6_127 = 0.1502IL_1VX6_056:IL_4IOA_100 = 0.1859IL_1VX6_056:IL_4QCN_104 = 0.1708IL_1VX6_056:IL_1VW3_090 = 0.1769IL_1VX6_056:IL_1S72_094 = 0.1979IL_1VX6_056:IL_1S72_019 = 0.5006IL_1VX6_056:IL_4W21_050 = 0.6898IL_1VX6_127:IL_2QBG_105 = 0.2267IL_1VX6_127:IL_4A1B_054 = 0.168IL_1VX6_127:IL_1VX6_056 = 0.1502IL_1VX6_127:IL_1VX6_127 = 0IL_1VX6_127:IL_4IOA_100 = 0.1507IL_1VX6_127:IL_4QCN_104 = 0.1263IL_1VX6_127:IL_1VW3_090 = 0.1737IL_1VX6_127:IL_1S72_094 = 0.2257IL_1VX6_127:IL_1S72_019 = 0.4629IL_1VX6_127:IL_4W21_050 = 0.6375IL_4IOA_100:IL_2QBG_105 = 0.2128IL_4IOA_100:IL_4A1B_054 = 0.1999IL_4IOA_100:IL_1VX6_056 = 0.1859IL_4IOA_100:IL_1VX6_127 = 0.1507IL_4IOA_100:IL_4IOA_100 = 0IL_4IOA_100:IL_4QCN_104 = 0.0699IL_4IOA_100:IL_1VW3_090 = 0.1437IL_4IOA_100:IL_1S72_094 = 0.1964IL_4IOA_100:IL_1S72_019 = 0.4596IL_4IOA_100:IL_4W21_050 = 0.6268IL_4QCN_104:IL_2QBG_105 = 0.2172IL_4QCN_104:IL_4A1B_054 = 0.1827IL_4QCN_104:IL_1VX6_056 = 0.1708IL_4QCN_104:IL_1VX6_127 = 0.1263IL_4QCN_104:IL_4IOA_100 = 0.0699IL_4QCN_104:IL_4QCN_104 = 0IL_4QCN_104:IL_1VW3_090 = 0.125IL_4QCN_104:IL_1S72_094 = 0.1846IL_4QCN_104:IL_1S72_019 = 0.4582IL_4QCN_104:IL_4W21_050 = 0.6142IL_1VW3_090:IL_2QBG_105 = 0.1852IL_1VW3_090:IL_4A1B_054 = 0.181IL_1VW3_090:IL_1VX6_056 = 0.1769IL_1VW3_090:IL_1VX6_127 = 0.1737IL_1VW3_090:IL_4IOA_100 = 0.1437IL_1VW3_090:IL_4QCN_104 = 0.125IL_1VW3_090:IL_1VW3_090 = 0IL_1VW3_090:IL_1S72_094 = 0.1724IL_1VW3_090:IL_1S72_019 = 0.4435IL_1VW3_090:IL_4W21_050 = 0.6093IL_1S72_094:IL_2QBG_105 = 0.2262IL_1S72_094:IL_4A1B_054 = 0.2212IL_1S72_094:IL_1VX6_056 = 0.1979IL_1S72_094:IL_1VX6_127 = 0.2257IL_1S72_094:IL_4IOA_100 = 0.1964IL_1S72_094:IL_4QCN_104 = 0.1846IL_1S72_094:IL_1VW3_090 = 0.1724IL_1S72_094:IL_1S72_094 = 0IL_1S72_094:IL_1S72_019 = 0.5066IL_1S72_094:IL_4W21_050 = 0.6652IL_1S72_019:IL_2QBG_105 = 0.4942IL_1S72_019:IL_4A1B_054 = 0.5184IL_1S72_019:IL_1VX6_056 = 0.5006IL_1S72_019:IL_1VX6_127 = 0.4629IL_1S72_019:IL_4IOA_100 = 0.4596IL_1S72_019:IL_4QCN_104 = 0.4582IL_1S72_019:IL_1VW3_090 = 0.4435IL_1S72_019:IL_1S72_094 = 0.5066IL_1S72_019:IL_1S72_019 = 0IL_1S72_019:IL_4W21_050 = 0.5857IL_4W21_050:IL_2QBG_105 = 0.7443IL_4W21_050:IL_4A1B_054 = 0.6951IL_4W21_050:IL_1VX6_056 = 0.6898IL_4W21_050:IL_1VX6_127 = 0.6375IL_4W21_050:IL_4IOA_100 = 0.6268IL_4W21_050:IL_4QCN_104 = 0.6142IL_4W21_050:IL_1VW3_090 = 0.6093IL_4W21_050:IL_1S72_094 = 0.6652IL_4W21_050:IL_1S72_019 = 0.5857IL_4W21_050:IL_4W21_050 = 0IL_2QBG_105IL_4A1B_054IL_1VX6_056IL_1VX6_127IL_4IOA_100IL_4QCN_104IL_1VW3_090IL_1S72_094IL_1S72_019IL_4W21_050Discrepancy0.000.200.400.60
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