Motif IL_92122.2 Version IL_92122.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_105 | 2QBG | 0.2172 | 1 | B | 23S rRNA | G | 2737 | A | 2738 | U | 2739 | A | 2740 | A | 2741 | G | 2742 | * | C | 2762 | G | 2763 | A | 2764 | A | 2766 | C | 2767 | cWW | cwW | tWH | tHS | cWW | |
| 2 | IL_4A1B_054 | 4A1B | 0.1827 | 1 | 1 | 26S RRNA | G | 1193 | A | 1194 | U | 1195 | A | 1196 | A | 1197 | G | 1198 | * | C | 1355 | G | 1356 | A | 1357 | A | 1359 | C | 1360 | cWW | cwW | tWH | tHS | cWW | |
| 3 | IL_1VX6_056 | 1VX6 | 0.1708 | 1 | A | 28S ribosomal RNA | G | 1294 | A | 1295 | U | 1296 | A | 1297 | A | 1298 | G | 1299 | * | C | 1456 | G | 1457 | A | 1458 | A | 1460 | C | 1461 | cWW | cwW | tWH | tHS | cWW | |
| 4 | IL_1VX6_127 | 1VX6 | 0.1263 | 1 | A | 28S ribosomal RNA | G | 3486 | A | 3487 | U | 3488 | A | 3489 | A | 3490 | U | 3491 | * | A | 3512 | G | 3513 | A | 3514 | A | 3516 | C | 3517 | cWW | cwW | tWH | tHS | cWW | |
| 5 | IL_4IOA_100 | 4IOA | 0.0699 | 1 | UAA/GAN with extra cWW (H) | X | LSU rRNA | G | 2717 | A | 2718 | U | 2719 | A | 2720 | A | 2721 | C | 2722 | * | G | 2742 | G | 2743 | A | 2744 | G | 2746 | C | 2747 | cWW | cWW | tWH | tHS | cWW |
| 6 | IL_4QCN_104 | 4QCN | 0.0000 | 1 | A | 23S Ribosomal RNA | G | 2750 | A | 2751 | U | 2752 | A | 2753 | A | 2754 | C | 2755 | * | G | 2775 | G | 2776 | A | 2777 | G | 2779 | C | 2780 | cWW | cWW | tWH | tHS | cWW | |
| 7 | IL_1VW3_090 | 1VW3 | 0.1250 | 1 | A | 21S ribosomal RNA | A | 3073 | A | 3074 | U | 3075 | A | 3076 | A | 3077 | A | 3078 | * | U | 3099 | G | 3100 | A | 3101 | G | 3103 | U | 3104 | cWW | cWW | tWH | tHS | cWW | |
| 8 | IL_1S72_094 | 1S72 | 0.1846 | 1 | UAA/GAN with extra cWW (H) | 0 | LSU rRNA | G | 2772 | G | 2773 | U | 2774 | A | 2775 | A | 2776 | G | 2777 | * | C | 2797 | G | 2798 | A | 2799 | A | 2801 | C | 2802 | cWW | cWW | tWH | tHS | cWW |
| 9 | IL_1S72_019 | 1S72 | 0.4582 | 0 | 0 | LSU rRNA | A | 562 | C | 563 | G | 564 | A | 565 | A | 566 | U | 567 | * | A | 591 | G | 592 | A | 593 | C | 594 | U | 595 | cWW | cWB | tHS | cWW | ||
| 10 | IL_4W21_050 | 4W21 | 0.6142 | 0 | 5 | 28S ribosomal RNA | G | 1455 | C | 1456 | G | 1457 | C | 1458 | A | 1459 | C | 1460 | * | G | 1425 | G | 1426 | A | 1427 | U | 1428 | C | 1429 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAAG*CGAUAC | 2 |
| GAUAAC*GGAAGC | 2 |
| GAUAAG*CGAAAC | 1 |
| GAUAAU*AGAAAC | 1 |
| AAUAAA*UGAAGU | 1 |
| GGUAAG*CGAAAC | 1 |
| ACGAAU*AGACU | 1 |
| GCGCAC*GGAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAA*GAAG | 3 |
| AUAA*GAAA | 2 |
| AUAA*GAUA | 2 |
| GUAA*GAAA | 1 |
| CGAA*GAC | 1 |
| CGCA*GAU | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_92122.2 | Only in the parent motif |
|---|---|---|---|
| IL_92122.1 Compare | IL_1S72_019, IL_2QBG_105, IL_1VW3_090, IL_1VX6_127, IL_1S72_094, IL_4QCN_104, IL_4IOA_100, IL_1VX6_056, IL_4A1B_054 | IL_4W21_050 | IL_1VWW_054 |
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- UAA/GAN with extra cWW (H) (2)
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.29 | Max 0.74
Coloring options: