IL_1VX6_146

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGCAGCAAAAUGCGAUACGC*GAAUG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97803.1

Basepair signature

cWW-R-R-R-cWW-tSS-cWW-cWW-bif-L-L-L-L-L-cWW-cSS-cSS-L-L-cWW

Number of instances in this motif group

1

Unit IDs

1VX6|1|C|C|48
1VX6|1|C|C|49
1VX6|1|C|G|50
1VX6|1|C|C|51
1VX6|1|C|A|52
1VX6|1|C|G|53
1VX6|1|C|C|54
1VX6|1|C|A|55
1VX6|1|C|A|56
1VX6|1|C|A|57
1VX6|1|C|A|58
1VX6|1|C|U|59
1VX6|1|C|G|60
1VX6|1|C|C|61
1VX6|1|C|G|62
1VX6|1|C|A|63
1VX6|1|C|U|64
1VX6|1|C|A|65
1VX6|1|C|C|66
1VX6|1|C|G|67
1VX6|1|C|C|68
*
1VX6|1|C|G|99
1VX6|1|C|A|100
1VX6|1|C|A|101
1VX6|1|C|U|102
1VX6|1|C|G|103

Current chains

Chain C

5.8S ribosomal RNA

Nearby chains

Chain A

28S ribosomal RNA