IL_1VY4_276

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_276 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.378

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

1VY4|1|DA|G|1319
1VY4|1|DA|C|1320
1VY4|1|DA|A|1321
1VY4|1|DA|A|1322
1VY4|1|DA|U|1323
1VY4|1|DA|G|1324
*
1VY4|1|DA|C|1330
1VY4|1|DA|A|1331
1VY4|1|DA|G|1332
1VY4|1|DA|C|1333

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DW

50S ribosomal protein L22

Chain DX

50S ribosomal protein L23