IL_1VY4_302

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

1VY4|1|DA|A|1938, 1VY4|1|DA|U|1944, 1VY4|1|DA|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY4_302 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1264

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

1VY4|1|DA|C|1934
1VY4|1|DA|G|1935
1VY4|1|DA|A|1936
1VY4|1|DA|A|1937
1VY4|1|DA|A|1938
1VY4|1|DA|U|1939
1VY4|1|DA|U|1940
1VY4|1|DA|C|1941
1VY4|1|DA|C|1942
1VY4|1|DA|U|1943
1VY4|1|DA|U|1944
1VY4|1|DA|G|1945
*
1VY4|1|DA|C|1961
1VY4|1|DA|C|1962
1VY4|1|DA|U|1963
1VY4|1|DA|G|1964

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CW

Transfer RNA; tRNA

Chain DD

50S ribosomal protein L2