IL_1VY6_021
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 1VY6|1|AA|A|532, 1VY6|1|AA|U|534, 1VY6|1|AA|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY6_021 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1512
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
1VY6|1|AA|G|515
1VY6|1|AA|U|516
1VY6|1|AA|G|517
1VY6|1|AA|C|518
1VY6|1|AA|C|519
1VY6|1|AA|A|520
1VY6|1|AA|G|521
*
1VY6|1|AA|C|528
1VY6|1|AA|G|529
1VY6|1|AA|G|530
1VY6|1|AA|U|531
1VY6|1|AA|A|532
1VY6|1|AA|A|533
1VY6|1|AA|U|534
1VY6|1|AA|A|535
1VY6|1|AA|C|536
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AC
- 30S ribosomal protein S3
- Chain AD
- 30S ribosomal protein S4
- Chain AL
- 30S ribosomal protein S12
- Chain AV
- mRNA
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