IL_1VY7_032
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGAG*UC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY7_032 not in the Motif Atlas
- Homologous match to IL_5J7L_036
- Geometric discrepancy: 0.0908
- The information below is about IL_5J7L_036
- Detailed Annotation
- Left turn
- Broad Annotation
- Left turn
- Motif group
- IL_29346.2
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
1VY7|1|AA|G|774
1VY7|1|AA|G|775
1VY7|1|AA|G|776
1VY7|1|AA|A|777
1VY7|1|AA|G|778
*
1VY7|1|AA|U|804
1VY7|1|AA|C|805
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AK
- 30S ribosomal protein S11
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- 50S ribosomal protein L2
Coloring options: