IL_1VY7_045
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUG*CACUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY7_045 not in the Motif Atlas
- Homologous match to IL_6CZR_158
- Geometric discrepancy: 0.1751
- The information below is about IL_6CZR_158
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- Minor groove platform
- Motif group
- IL_40144.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
1VY7|1|AA|G|1124
1VY7|1|AA|U|1125
1VY7|1|AA|U|1126
1VY7|1|AA|G|1127
*
1VY7|1|AA|C|1145
1VY7|1|AA|A|1146
1VY7|1|AA|C|1147
1VY7|1|AA|U|1148
1VY7|1|AA|C|1149
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AI
- 30S ribosomal protein S9
- Chain AJ
- 30S ribosomal protein S10
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