IL_1VY7_073
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 1VY7|1|BA|U|504, 1VY7|1|BA|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY7_073 not in the Motif Atlas
- Geometric match to IL_7RQB_014
- Geometric discrepancy: 0.0439
- The information below is about IL_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.6
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
1VY7|1|BA|G|481
1VY7|1|BA|A|482
1VY7|1|BA|A|483
1VY7|1|BA|C|484
*
1VY7|1|BA|G|496
1VY7|1|BA|A|497
1VY7|1|BA|G|498
1VY7|1|BA|U|499
1VY7|1|BA|G|500
1VY7|1|BA|A|501
1VY7|1|BA|A|502
1VY7|1|BA|A|503
1VY7|1|BA|U|504
1VY7|1|BA|A|505
1VY7|1|BA|G|506
1VY7|1|BA|A|507
1VY7|1|BA|G|508
1VY7|1|BA|C|509
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain BW
- 50S ribosomal protein L22
- Chain BY
- 50S ribosomal protein L24
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