IL_1VY7_098
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 1VY7|1|BA|U|1026, 1VY7|1|BA|A|1127, 1VY7|1|BA|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY7_098 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0508
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
1VY7|1|BA|G|1024
1VY7|1|BA|G|1025
1VY7|1|BA|U|1026
1VY7|1|BA|A|1027
1VY7|1|BA|A|1028
1VY7|1|BA|A|1029
1VY7|1|BA|G|1030
*
1VY7|1|BA|C|1124
1VY7|1|BA|G|1125
1VY7|1|BA|A|1126
1VY7|1|BA|A|1127
1VY7|1|BA|A|1128
1VY7|1|BA|A|1129
1VY7|1|BA|U|1130
1VY7|1|BA|G|1131
1VY7|1|BA|A|1132
1VY7|1|BA|U|1133
1VY7|1|BA|C|1135
1VY7|1|BA|G|1136
1VY7|1|BA|G|1137
1VY7|1|BA|G|1138
1VY7|1|BA|G|1139
1VY7|1|BA|C|1140
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B9
- 50S ribosomal protein L36
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BE
- 50S ribosomal protein L3
- Chain BN
- 50S ribosomal protein L13
- Chain BQ
- 50S ribosomal protein L16
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