IL_1VY7_142

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCUGUGAAC*GGGAGG

Length

15 nucleotides

Bulged bases

1VY7|1|BA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_142 not in the Motif Atlas

Geometric match to IL_6HCT_001

Geometric discrepancy: 0.3957

The information below is about IL_6HCT_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_74205.1

Basepair signature

cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

Number of instances in this motif group

3

Unit IDs

1VY7|1|BA|C|2128
1VY7|1|BA|C|2129
1VY7|1|BA|U|2130
1VY7|1|BA|G|2131
1VY7|1|BA|U|2132
1VY7|1|BA|G|2133
1VY7|1|BA|A|2134
1VY7|1|BA|A|2135
1VY7|1|BA|C|2136
*
1VY7|1|BA|G|2155
1VY7|1|BA|G|2156
1VY7|1|BA|G|2157
1VY7|1|BA|A|2158
1VY7|1|BA|G|2159
1VY7|1|BA|G|2160

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains