IL_1VY7_158
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CCUCU*AUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY7_158 not in the Motif Atlas
- Homologous match to IL_7RQB_104
- Geometric discrepancy: 0.0739
- The information below is about IL_7RQB_104
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.6
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
1VY7|1|BA|C|2680
1VY7|1|BA|C|2681
1VY7|1|BA|U|2682
1VY7|1|BA|C|2683
1VY7|1|BA|U|2684
*
1VY7|1|BA|A|2725
1VY7|1|BA|U|2726
1VY7|1|BA|G|2727
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain BE
- 50S ribosomal protein L3
- Chain BO
- 50S ribosomal protein L14
- Chain BR
- 50S ribosomal protein L17
- Chain BT
- 50S ribosomal protein L19
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