IL_1VY7_164

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_164 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.0595

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

1VY7|1|BA|U|2847
1VY7|1|BA|G|2848
1VY7|1|BA|U|2849
1VY7|1|BA|A|2850
1VY7|1|BA|A|2851
1VY7|1|BA|G|2852
*
1VY7|1|BA|U|2865
1VY7|1|BA|U|2866
1VY7|1|BA|G|2867
1VY7|1|BA|A|2868
1VY7|1|BA|G|2869

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L17

Chain BT

50S ribosomal protein L19