IL_1VY7_178

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

1VY7|1|CA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_178 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0933

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

1VY7|1|CA|G|148
1VY7|1|CA|A|149
1VY7|1|CA|C|150
1VY7|1|CA|A|151
1VY7|1|CA|A|152
1VY7|1|CA|C|153
*
1VY7|1|CA|G|168
1VY7|1|CA|C|169
1VY7|1|CA|U|170
1VY7|1|CA|A|171
1VY7|1|CA|A|172
1VY7|1|CA|U|173
1VY7|1|CA|C|174

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CT

30S ribosomal protein S20