IL_1VY7_199

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

1VY7|1|CA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY7_199 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.0867

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

1VY7|1|CA|G|683
1VY7|1|CA|A|684
1VY7|1|CA|G|685
1VY7|1|CA|U|686
1VY7|1|CA|A|687
1VY7|1|CA|G|688
*
1VY7|1|CA|C|699
1VY7|1|CA|G|700
1VY7|1|CA|C|701
1VY7|1|CA|A|702
1VY7|1|CA|G|703
1VY7|1|CA|A|704
1VY7|1|CA|U|705
1VY7|1|CA|A|706
1VY7|1|CA|C|707

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA